hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18500666/chunk_1/iprscan-20080501-18500666.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0153
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03133.5.ls Tubulin-tyrosine ligase family                 413.9   2.2e-121   1
PF03133.5.fs Tubulin-tyrosine ligase family                 412.0   8.1e-121   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03133.5.fs   1/1     340   636 ..     1   330 []   412.0 8.1e-121
PF03133.5.ls   1/1     340   636 ..     1   330 []   413.9 2.2e-121

Alignments of top-scoring domains:
PF03133.5.fs: domain 1 of 1, from 340 to 636: score 412.0, E = 8.1e-121
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++er+   + ++N+FP+++ +t+KD+l+ +++r+ + +g++    
    KIAA0153   340    KLSQERP---GVLLNQFPCENLLTVKDCLASIARRAGGPEGPP---- 379  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lprtf+l+t+l++fv+yf++rer+g+dn+WI+KP+++aR  ++++t++
    KIAA0153   380 -WLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKS 428  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   l+ i++            ++++ p+vV+kYIe P+L+ +eDvgk+KFD+R
    KIAA0153   429 LHSIIR------------HRESTPKVVSKYIESPVLFLREDVGKVKFDIR 466  

                   lYVLvtsvdPLriYvYregllRFAsvkYsplsdlddvemHLTNysiqkks
                   ++VL++sv+PLr +vY+ ++lRF+++ +  l+dldd+e+H+T+++++++ 
    KIAA0153   467 YIVLLRSVRPLRLFVYDVFWLRFSNRAFA-LNDLDDYEKHFTVMNYDPD- 514  

                   snYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiiktil
                            ++++v+++ ++ +++++++e  + + +++++i++++++ ++
    KIAA0153   515 --------VVLKQVHCEEFIPEFEKQYPE--FPWTDVQAEIFRAFTELFQ 554  

                   aaeiveasrlnvaplyncFELyGfDimlkw.d..D.DenlkPwLLEVNas
                   +a+ +++++l+++++++++++y++D+mlkw++++D+ ++++P++LEVN++
    KIAA0153   555 VAC-AKPPPLGLCDYPSSRAMYAVDLMLKWdNgpDgRRVMQPQILEVNFN 603  

                   PslhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   P++++++++++ +++++++++++   + +p+ ++  +   
    KIAA0153   604 PDCERACRYHPTFFNDVFSTLFL---D-QPGGCHVTC    636  

PF03133.5.ls: domain 1 of 1, from 340 to 636: score 413.9, E = 2.2e-121
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      ++++er+   + ++N+FP+++ +t+KD+l+ +++r+ + +g++    
    KIAA0153   340    KLSQERP---GVLLNQFPCENLLTVKDCLASIARRAGGPEGPP---- 379  

                   dflprtfilptdlrefvdyfekreregqdntWIvKPsasaRGrGIritnk
                    +lprtf+l+t+l++fv+yf++rer+g+dn+WI+KP+++aR  ++++t++
    KIAA0153   380 -WLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKS 428  

                   lsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDvgkrKFDlR
                   l+ i++            ++++ p+vV+kYIe P+L+ +eDvgk+KFD+R
    KIAA0153   429 LHSIIR------------HRESTPKVVSKYIESPVLFLREDVGKVKFDIR 466  

                   lYVLvtsvdPLriYvYregllRFAsvkYsplsdlddvemHLTNysiqkks
                   ++VL++sv+PLr +vY+ ++lRF+++ +  l+dldd+e+H+T+++++++ 
    KIAA0153   467 YIVLLRSVRPLRLFVYDVFWLRFSNRAFA-LNDLDDYEKHFTVMNYDPD- 514  

                   snYsrlnedynepvghkwslqnlwlyleemgidkeeiwlqiesiiiktil
                            ++++v+++ ++ +++++++e  + + +++++i++++++ ++
    KIAA0153   515 --------VVLKQVHCEEFIPEFEKQYPE--FPWTDVQAEIFRAFTELFQ 554  

                   aaeiveasrlnvaplyncFELyGfDimlkw.d..D.DenlkPwLLEVNas
                   +a+ +++++l+++++++++++y++D+mlkw++++D+ ++++P++LEVN++
    KIAA0153   555 VAC-AKPPPLGLCDYPSSRAMYAVDLMLKWdNgpDgRRVMQPQILEVNFN 603  

                   PslhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   P++++++++++ +++++++++++   + +p+ ++  +   
    KIAA0153   604 PDCERACRYHPTFFNDVFSTLFL---D-QPGGCHVTC    636  

//