# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00521.fasta.huge -Q ../query/KIAA0153.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0153, 638 aa
 vs ./tmplib.23147 library

1986867 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9643+/-0.00478; mu= 15.1950+/- 0.327
 mean_var=78.8557+/-18.185, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.144430

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0173  ( 1203 res)   ha02346                    (1203)  147 40.5   0.001


>>KIAA0173  ( 1203 res)   ha02346                         (1203 aa)
 initn: 116 init1:  77 opt: 147  Z-score: 158.8  bits: 40.5 E(): 0.001
Smith-Waterman score: 196;  21.629% identity (52.247% similar) in 356 aa overlap (263-604:582-915)

            240       250       260       270       280       290  
KIAA01 TRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQAILEENKEKLPLDINPVV
                                     :  :. :   : .  .:  :::: .   ..
KIAA01 SVAMISRSCMEILTKPLSNHEKVVRPALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLL
             560       570       580       590       600       610 

            300       310       320       330       340       350  
KIAA01 HPHGHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLLNQ
       .     .:. : . ..... :  :  .  :. . : :  ..:     .. . :    ::.
KIAA01 R-----WKMSTVTPNIVKQ-TIGRSHFKISKRNDDWLGCWGHHMKSPSFRSIREHQKLNH
                  620        630       640       650       660     

            360           370       380       390       400        
KIAA01 FPCENLLTVKD----CLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDN
       ::    .  ::     :. .  : :  :   ..:..:     ::: .. ...  . .  .
KIAA01 FPGSFQIGRKDRLWRNLSRMQSRFGKKEFS-FFPQSFI----LPQDAKLLRKAWESSSRQ
         670       680       690        700           710       720

      410       420       430       440       450       460        
KIAA01 HWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYI
       .:: ::   ::..  .: ..  .. ..:   : .:..:...: :     ..  :::.:  
KIAA01 KWIVKPPASARGIGIQVIHKWSQLPKRR---PLLVQRYLHKPYL-----ISGSKFDLRIY
              730       740          750       760            770  

      470       480       490         500       510       520      
KIAA01 VLLRSVRPLRLFVYDVFWLRFSNRAFA--LNDLDDYEKHFTVMNYDPDVVLKQVHCEEFI
       : . :  :::.....   .::..  ..  ...: .   :.: .. .   .  :.. .:. 
KIAA01 VYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTNYSVNKKNAEYQANADEMA
            780       790       800       810       820       830  

        530       540             550         560       570        
KIAA01 PEFEKQYPEFPWTDVQAE------IFRAFTELF--QVACAKPPPLGLCDYPSSRAMYAVD
        . .:   .  :. .. .      :.. . ..    .  ..:   .:  .   :  :.  
KIAA01 CQGHKWALKALWNYLSQKGVNSDAIWEKIKDVVVKTIISSEPYVTSLLKMYVRRP-YSCH
            840       850       860       870       880        890 

      580       590       600       610       620       630        
KIAA01 LMLKWDNGPDGRRVMQPQILEVNFNPDCERACRYHPTFFNDVFSTLFLDQPGGCHVTCLV
        .. .:   :  . ..: .::::..:                                  
KIAA01 ELFGFDIMLD--ENLKPWVLEVNISPSLHSSSPLDISIKGQMIRDLLNLAGFVLPNAEDI
             900         910       920       930       940         




638 residues in 1 query   sequences
1986867 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:35 2008 done: Thu Dec 18 15:09:35 2008
 Total Scan time:  0.510 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]