hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18431423/chunk_1/iprscan-20080501-18431423.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0149 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00181 84.7 1.1e-20 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/9 51 87 .. 1 32 [] 14.7 13 SM00181 2/9 98 130 .. 1 32 [] 13.4 17 SM00181 3/9 132 160 .. 1 32 [] 2.3 1.6e+02 SM00181 4/9 162 191 .. 1 32 [] 4.5 1e+02 SM00181 5/9 195 220 .. 1 32 [] 9.8 35 SM00181 6/9 224 249 .. 1 32 [] 15.2 9.1 SM00181 7/9 260 294 .. 1 32 [] 6.4 69 SM00181 8/9 305 339 .. 1 32 [] 14.8 12 SM00181 9/9 350 395 .. 1 32 [] 3.6 1.2e+02 Alignments of top-scoring domains: SM00181: domain 1 of 9, from 51 to 87: score 14.7, E = 13 *->eCa........pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* eC + ++++ C+ + +C++ C+C+ pG+ g +C KIAA0149 51 ECTipicegpdACQKDE-----VCVkPGLCrCK-PGFFGaHCS 87 SM00181: domain 2 of 9, from 98 to 130: score 13.4, E = 17 *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C ++ pC+++ G+C + + C+C+ + g rCe KIAA0149 98 DCRescPCHPH-----GQCEpaTGACqCQ-ADRWGaRCE 130 SM00181: domain 3 of 9, from 132 to 160: score 2.3, E = 1.6e+02 *->eCapCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +Ca C+++ G+C + + C+C pG+ ++C KIAA0149 132 PCA-CGPH-----GRCDpaTGVChCE-PGWWSsTCR 160 SM00181: domain 4 of 9, from 162 to 191: score 4.5, E = 1e+02 *->eCapCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* +C+ C + ++C + C C+ pG+ g+rC KIAA0149 162 PCQ-CNTAA----ARCEqaTGACvCK-PGWWGrRCS 191 SM00181: domain 5 of 9, from 195 to 220: score 9.8, E = 35 *->eCa..pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* C+++pC+++ s +C C+ pG+ g+ C+ KIAA0149 195 NCHgsPCEQD---------SGRCaCR-PGWWGpECQ 220 SM00181: domain 6 of 9, from 224 to 249: score 15.2, E = 9.1 *->eCa..pCsnGgtEqnGtCisytC.CpgpGytg.rCe<-* eC ++ Cs s +C+Cp pG++g rCe KIAA0149 224 ECVrgRCSAA---------SGECtCP-PGFRGaRCE 249 SM00181: domain 7 of 9, from 260 to 294: score 6.4, E = 69 *->eCa....pCsnGgtEqnGtCi..sytC..CpgpGytg.rCe<-* Ca++ + C ++ C +++ +C++C pG+ g++C+ KIAA0149 260 QCAhscgRCKHNE-----PCSpdTGSCesCE-PGWNGtQCQ 294 SM00181: domain 8 of 9, from 305 to 339: score 14.8, E = 12 *->eCa....pCsnGgtEqnGtCi..sytC..CpgpGytg.rCe<-* C+++ + C +G C +++ +C++C pG+ g+rCe KIAA0149 305 SCEqqcpHCRHGE-----ACEpdTGHCqrCD-PGWLGpRCE 339 SM00181: domain 9 of 9, from 350 to 395: score 3.6, E = 1.2e+02 *->eCa.pCsnGgtEqnGtCi..................sytC...Cpgp +C + C tC+ ++ ++ +++ + + +++C+ +Cp + KIAA0149 350 DCGsTCP--------TCVqgscdtvtgdcvcsagywGPSCnasCP-A 387 Gytg.rCe<-* G++g++C KIAA0149 388 GFHGnNCS 395 //