hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18431423/chunk_1/iprscan-20080501-18431423.nocrc
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Query sequence: KIAA0149
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF07974.3.ls EGF-like domain                             118.4    1.9e-32   9
PF07974.3.fs EGF-like domain                             110.0    6.2e-30  11
PF00053.14.fs Laminin EGF-like (Domains III and V)         93.3    2.2e-26   8
PF00008.17.fs EGF-like domain                              35.8      4e-09   8
PF00008.17.ls EGF-like domain                              36.8    7.1e-08   6

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF07974.3.fs   1/11     57    86 ..     1    37 []    28.3  6.6e-07
PF07974.3.ls   1/9      57    86 ..     1    37 []    29.9    8e-06
PF00053.14.fs   2/8     103   130 ..     1    41 [.    17.5   0.0002
PF00053.14.fs   4/8     163   190 ..     1    40 [.    28.2  1.7e-07

Alignments of top-scoring domains:
PF07974.3.fs: domain 1 of 11, from 57 to 86: score 28.3, E = 6.6e-07
                   *->C.....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C++++ C+  + +Cv+p       g C C++g    ++Ga+C   
    KIAA0149    57    CegpdaCQK-DEVCVKP-------GLCRCKPG----FFGAHC    86   

PF07974.3.ls: domain 1 of 9, from 57 to 86: score 29.9, E = 8e-06
                   *->C.....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C++++ C+  + +Cv+p       g C C++g    ++Ga+C   
    KIAA0149    57    CegpdaCQK-DEVCVKP-------GLCRCKPG----FFGAHC    86   

PF00053.14.fs: domain 2 of 8, from 103 to 130: score 17.5, E = 0.0002
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd<-*
                      C C+phG     +C +        tG+C+ C+    G rC+   
    KIAA0149   103    CPCHPHG-----QCEP-------ATGACQ-CQADRWGARCE    130  

PF00053.14.fs: domain 4 of 8, from 163 to 190: score 28.2, E = 1.7e-07
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrC<-*
                      C+Cn ++    ++C +        tG+C+ Ckp+  GrrC   
    KIAA0149   163    CQCNTAA----ARCEQ-------ATGACV-CKPGWWGRRC    190  

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