hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18395059/chunk_1/iprscan-20080501-18395059.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0147 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 371.1 6.8e-107 4 SM00369 138.6 6.5e-37 11 SM00364 47.9 1.3e-09 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00364 1/10 35 54 .. 1 20 [] 10.7 25 SM00369 1/11 58 80 .. 1 24 [] 17.2 2.4 SM00369 2/11 81 104 .. 1 24 [] 1.2 3e+02 SM00364 2/10 83 100 .. 1 20 [] 0.0 6.2e+02 SM00369 3/11 127 149 .. 1 24 [] 0.0 4.1e+02 SM00364 3/10 150 169 .. 1 20 [] 5.4 1.2e+02 SM00369 4/11 150 172 .. 1 24 [] 9.7 27 SM00364 4/10 173 192 .. 1 20 [] 9.7 33 SM00369 5/11 173 195 .. 1 24 [] 16.9 2.9 SM00364 5/10 196 216 .. 1 20 [] 3.9 1.9e+02 SM00369 6/11 196 218 .. 1 24 [] 25.2 0.0094 SM00369 7/11 219 241 .. 1 24 [] 14.6 6.9 SM00364 6/10 219 238 .. 1 20 [] 7.6 63 SM00364 7/10 242 261 .. 1 20 [] 1.6 3.9e+02 SM00369 8/11 242 265 .. 1 24 [] 19.4 0.5 SM00364 8/10 265 284 .. 1 20 [] 0.1 6e+02 SM00369 9/11 311 334 .. 1 24 [] 24.5 0.014 SM00364 9/10 311 330 .. 1 20 [] 7.0 76 SM00369 10/11 335 356 .. 1 24 [] 5.4 91 SM00364 10/10 357 376 .. 1 20 [] 1.9 3.6e+02 SM00369 11/11 357 380 .. 1 24 [] 4.6 1.2e+02 SM00228 1/4 736 815 .. 1 80 [] 96.5 3.2e-24 SM00228 2/4 870 950 .. 1 80 [] 93.0 3.5e-23 SM00228 3/4 1012 1093 .. 1 80 [] 99.0 5.4e-25 SM00228 4/4 1109 1192 .. 1 80 [] 82.6 4.8e-20 Alignments of top-scoring domains: SM00364: domain 1 of 10, from 35 to 54: score 10.7, E = 25 *->PpsLkeLnvsnNrLteLPeL<-* sL+eL + N+L+eLP KIAA0147 35 SRSLEELLLDANQLRELPKP 54 SM00369: domain 1 of 11, from 58 to 80: score 17.2, E = 2.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nLr+L Ls+N +++LPp++ ++ KIAA0147 58 LLNLRKLGLSDNEIQRLPPEV-AN 80 SM00369: domain 2 of 11, from 81 to 104: score 1.2, E = 3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* +L eLd s+N + ++P+ + + KIAA0147 81 FMQLVELDVSRNDIPEIPESIKFC 104 SM00364: domain 2 of 10, from 83 to 100: score 0.0, E = 6.2e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L eL+vs+N + e Pe KIAA0147 83 --QLVELDVSRNDIPEIPES 100 SM00369: domain 3 of 11, from 127 to 149: score 0.0, E = 4.1e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L +L L++ L++LP ++ ++ KIAA0147 127 LRSLAHLALNDVSLQALPGDV-GN 149 SM00364: domain 3 of 10, from 150 to 169: score 5.4, E = 1.2e+02 *->PpsLkeLnvsnNrLteLPeL<-* ++L +L ++N L++LP+ KIAA0147 150 LANLVTLELRENLLKSLPAS 169 SM00369: domain 4 of 11, from 150 to 172: score 9.7, E = 27 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +L L N L+sLP+ + + KIAA0147 150 LANLVTLELRENLLKSLPASL-SF 172 SM00364: domain 4 of 10, from 173 to 192: score 9.7, E = 33 *->PpsLkeLnvsnNrLteLPeL<-* +L+ L+ ++N L+ LP+ KIAA0147 173 LVKLEQLDLGGNDLEVLPDT 192 SM00369: domain 5 of 11, from 173 to 195: score 16.9, E = 2.9 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+ LdL++N L+ LP ++++ KIAA0147 173 LVKLEQLDLGGNDLEVLP-DTLGA 195 SM00364: domain 5 of 10, from 196 to 216: score 3.9, E = 1.9e+02 *->PpsLkeLnvsnNrLteL.PeL<-* p+L+eL ++N+L+ L+PeL KIAA0147 196 LPNLRELWLDRNQLSALpPEL 216 SM00369: domain 6 of 11, from 196 to 218: score 25.2, E = 0.0094 *->LpnLreLdLsnNqLtsLPpgaFqg<-* LpnLreL L++NqL++LPp++ ++ KIAA0147 196 LPNLRELWLDRNQLSALPPEL-GN 218 SM00369: domain 7 of 11, from 219 to 241: score 14.6, E = 6.9 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L Ld s N+L++LP+++ +g KIAA0147 219 LRRLVCLDVSENRLEELPAEL-GG 241 SM00364: domain 6 of 10, from 219 to 238: score 7.6, E = 63 *->PpsLkeLnvsnNrLteLPeL<-* +L L+vs+NrL+eLP+ KIAA0147 219 LRRLVCLDVSENRLEELPAE 238 SM00364: domain 7 of 10, from 242 to 261: score 1.6, E = 3.9e+02 *->PpsLkeLnvsnNrLteLPeL<-* L+ L s N L++LP+ KIAA0147 242 LVLLTDLLLSQNLLRRLPDG 261 SM00369: domain 8 of 11, from 242 to 265: score 19.4, E = 0.5 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+ L+ L Ls N L++LP+g+ q KIAA0147 242 LVLLTDLLLSQNLLRRLPDGIGQL 265 SM00364: domain 8 of 10, from 265 to 284: score 0.1, E = 6e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L +L v+ NrL e e KIAA0147 265 LKQLSILKVDQNRLCEVTEA 284 SM00369: domain 9 of 11, from 311 to 334: score 24.5, E = 0.014 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+ L+ ++N+L++LPp++ ++ KIAA0147 311 LTKLTNLNVDRNHLEALPPEIGGC 334 SM00364: domain 9 of 10, from 311 to 330: score 7.0, E = 76 *->PpsLkeLnvsnNrLteLPeL<-* +L+ Lnv++N+L+ LP KIAA0147 311 LTKLTNLNVDRNHLEALPPE 330 SM00369: domain 10 of 11, from 335 to 356: score 5.4, E = 91 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L +L+L +N+L LPp++ ++ KIAA0147 335 -VALSVLSLRDNRLAVLPPEL-AH 356 SM00364: domain 10 of 10, from 357 to 376: score 1.9, E = 3.6e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L L+v +NrL +LP KIAA0147 357 TTELHVLDVAGNRLQSLPFA 376 SM00369: domain 11 of 11, from 357 to 380: score 4.6, E = 1.2e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L +Ld +N+L+sLP + + KIAA0147 357 TTELHVLDVAGNRLQSLPFALTHL 380 SM00228: domain 1 of 4, from 736 to 815: score 96.5, E = 3.2e-24 *->gglGfsivg............gifvssvvpGspAakaGrkslglLkv gglG+si+g++++++ +++++gif+s+v + +pAa+aG ++v KIAA0147 736 GGLGISIAGgkgstpykgddeGIFISRVSEEGPAARAG------VRV 776 GDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* GD++leVNG + ++g+ h eav++l++a G+ v++ v R+ KIAA0147 777 GDKLLEVNG-VALQGAEHHEAVEALRGA-----GTAVQMRVWRER 815 SM00228: domain 2 of 4, from 870 to 950: score 93.0, E = 3.5e-23 *->gglGfsivg............gifvssvvpGspAakaGrkslglLkv glGfsi+g++++++ + ++ gifvs++ +G++A++aG+ L+v KIAA0147 870 RGLGFSIAGgkgstpyragdaGIFVSRIAEGGAAHRAGT-----LQV 911 GDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* GD++l++NG ++v+ ++h+ av ll +a++ ++ L+++R+ KIAA0147 912 GDRVLSING-VDVTEARHDHAVSLLTAASP-----TIALLLEREA 950 SM00228: domain 3 of 4, from 1012 to 1093: score 99.0, E = 5.4e-25 *->gglGfsivg..............gifvssvvpGspAakaGrkslglL g+lG+sivg++++++++ + +++g+f+s+v+p + Aa++G L KIAA0147 1012 GPLGLSIVGgsdhsshpfgvqepGVFISKVLPRGLAARSG------L 1052 kvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +vGD+Il+VNG ++v+++th+eav +l +++ +++L+v+R++ KIAA0147 1053 RVGDRILAVNG-QDVRDATHQEAVSALLRPCL-----ELSLLVRRDP 1093 SM00228: domain 4 of 4, from 1109 to 1192: score 82.6, E = 4.8e-20 *->gglGfsivg...............gifvssvvpGspAakaGrkslgl + lG+si+g+ +++ +++++++++gif+s+v p ++A ++Gr KIAA0147 1109 ERLGISIRGgarghagnprdptdeGIFISKVSPTGAAGRDGR----- 1150 LkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<- L+vG ++leVN +s+ glth eav+ll++ g+ ++t++v+ g KIAA0147 1151 LRVGLRLLEVNQ-QSLLGLTHGEAVQLLRSVGD-----TLTVLVCDGF 1192 * KIAA0147 - - //