hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18395059/chunk_1/iprscan-20080501-18395059.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0147 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 332.4 7.1e-97 4 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 324.8 1.4e-94 4 PF00560.23.ls Leucine Rich Repeat 166.0 8.6e-47 15 PF00560.23.fs Leucine Rich Repeat 138.0 2.4e-38 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/15 37 59 .. 1 24 [] 11.6 1.8 PF00560.23.fs 2/15 60 81 .. 1 24 [] 12.9 0.018 PF00560.23.ls 2/15 60 81 .. 1 24 [] 14.8 0.3 PF00560.23.ls 3/15 83 104 .. 1 24 [] 11.9 1.6 PF00560.23.ls 4/15 106 127 .. 1 24 [] 9.8 3.9 PF00560.23.fs 6/15 152 173 .. 1 24 [] 11.7 0.037 PF00560.23.ls 6/15 152 173 .. 1 24 [] 13.6 0.67 PF00560.23.ls 7/15 175 196 .. 1 24 [] 14.4 0.39 PF00560.23.fs 7/15 175 196 .. 1 24 [] 12.5 0.023 PF00560.23.fs 8/15 198 219 .. 1 24 [] 16.5 0.0018 PF00560.23.ls 8/15 198 219 .. 1 24 [] 18.4 0.024 PF00560.23.ls 9/15 221 242 .. 1 24 [] 12.7 1.1 PF00560.23.ls 12/15 290 311 .. 1 24 [] 8.8 5.9 PF00560.23.fs 13/15 313 334 .. 1 24 [] 11.3 0.049 PF00560.23.ls 13/15 313 334 .. 1 24 [] 13.2 0.91 PF00560.23.ls 14/15 336 357 .. 1 24 [] 9.6 4.2 PF00560.23.ls 15/15 359 380 .. 1 24 [] 13.9 0.55 PF00560.23.fs 15/15 359 380 .. 1 24 [] 12.0 0.031 PF00595.14.ls 1/4 728 812 .. 1 86 [] 84.8 2.4e-22 PF00595.14.fs 1/4 728 812 .. 1 86 [] 82.8 1.2e-22 PF00595.14.ls 2/4 862 947 .. 1 86 [] 80.9 3.8e-21 PF00595.14.fs 2/4 871 947 .. 12 86 .] 79.2 1.3e-21 PF00595.14.fs 3/4 1004 1090 .. 1 86 [] 94.5 6.4e-26 PF00595.14.ls 3/4 1004 1090 .. 1 86 [] 96.5 7.5e-26 PF00595.14.ls 4/4 1100 1189 .. 1 86 [] 70.2 5.9e-18 PF00595.14.fs 4/4 1100 1189 .. 1 86 [] 68.3 1.6e-18 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 15, from 37 to 59: score 11.6, E = 1.8 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +LeeL L+ N +l ++lp+ ++ l KIAA0147 37 SLEELLLDA-N-QL-RELPKPfFrLL 59 PF00560.23.fs: domain 2 of 15, from 60 to 81: score 12.9, E = 0.018 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L Ls+ N ++ lp+++ n+ KIAA0147 60 NLRKLGLSD-N-EIQ-RLPPEVaNF 81 PF00560.23.ls: domain 2 of 15, from 60 to 81: score 14.8, E = 0.3 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L Ls+ N ++ lp+++ n+ KIAA0147 60 NLRKLGLSD-N-EIQ-RLPPEVaNF 81 PF00560.23.ls: domain 3 of 15, from 83 to 104: score 11.9, E = 1.6 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L eLd+s+ N + +++p+s++ + KIAA0147 83 QLVELDVSR-N-DI-PEIPESIkFC 104 PF00560.23.ls: domain 4 of 15, from 106 to 127: score 9.8, E = 3.9 *->nLeeLdLsgCNpsltgslpssl.nl<-* Le+ d+sg N +l+ lp++++ l KIAA0147 106 ALEIADFSG-N-PLS-RLPDGFtQL 127 PF00560.23.fs: domain 6 of 15, from 152 to 173: score 11.7, E = 0.037 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +L+L+ N l +slp+sl+ l KIAA0147 152 NLVTLELRE-N-LL-KSLPASLsFL 173 PF00560.23.ls: domain 6 of 15, from 152 to 173: score 13.6, E = 0.67 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +L+L+ N l +slp+sl+ l KIAA0147 152 NLVTLELRE-N-LL-KSLPASLsFL 173 PF00560.23.ls: domain 7 of 15, from 175 to 196: score 14.4, E = 0.39 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le LdL+g N l+ lp+ l+ l KIAA0147 175 KLEQLDLGG-N-DLE-VLPDTLgAL 196 PF00560.23.fs: domain 7 of 15, from 175 to 196: score 12.5, E = 0.023 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le LdL+g N l+ lp+ l+ l KIAA0147 175 KLEQLDLGG-N-DLE-VLPDTLgAL 196 PF00560.23.fs: domain 8 of 15, from 198 to 219: score 16.5, E = 0.0018 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+eL L++ N +l+ lp++l+nl KIAA0147 198 NLRELWLDR-N-QLS-ALPPELgNL 219 PF00560.23.ls: domain 8 of 15, from 198 to 219: score 18.4, E = 0.024 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+eL L++ N +l+ lp++l+nl KIAA0147 198 NLRELWLDR-N-QLS-ALPPELgNL 219 PF00560.23.ls: domain 9 of 15, from 221 to 242: score 12.7, E = 1.1 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L Ld+s N +l+ +lp++l++l KIAA0147 221 RLVCLDVSE-N-RLE-ELPAELgGL 242 PF00560.23.ls: domain 12 of 15, from 290 to 311: score 8.8, E = 5.9 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL eL L N l lp sl++l KIAA0147 290 NLSELILTE-N-LLM-ALPRSLgKL 311 PF00560.23.fs: domain 13 of 15, from 313 to 334: score 11.3, E = 0.049 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L++++ N +l+ lp++++++ KIAA0147 313 KLTNLNVDR-N-HLE-ALPPEIgGC 334 PF00560.23.ls: domain 13 of 15, from 313 to 334: score 13.2, E = 0.91 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L++++ N +l+ lp++++++ KIAA0147 313 KLTNLNVDR-N-HLE-ALPPEIgGC 334 PF00560.23.ls: domain 14 of 15, from 336 to 357: score 9.6, E = 4.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* L +L+L++ N +l lp++l + KIAA0147 336 ALSVLSLRD-N-RLA-VLPPELaHT 357 PF00560.23.ls: domain 15 of 15, from 359 to 380: score 13.9, E = 0.55 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +Ld+ g N +l+ slp l++l KIAA0147 359 ELHVLDVAG-N-RLQ-SLPFALtHL 380 PF00560.23.fs: domain 15 of 15, from 359 to 380: score 12.0, E = 0.031 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +Ld+ g N +l+ slp l++l KIAA0147 359 ELHVLDVAG-N-RLQ-SLPFALtHL 380 PF00595.14.ls: domain 1 of 4, from 728 to 812: score 84.8, E = 2.4e-22 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea ++t+ + + gglG+si+gg++ + +++d+gif+s+v++ g+A++ KIAA0147 728 TLTILR--QTGGLGISIAGGKGSTPykgdDEGIFISRVSEE-GPAAR 771 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +G ++GD++l+vNG+ l + +h eav+al+g+g+ v++ v+ KIAA0147 772 AG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVW 812 PF00595.14.fs: domain 1 of 4, from 728 to 812: score 82.8, E = 1.2e-22 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea ++t+ + + gglG+si+gg++ + +++d+gif+s+v++ g+A++ KIAA0147 728 TLTILR--QTGGLGISIAGGKGSTPykgdDEGIFISRVSEE-GPAAR 771 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +G ++GD++l+vNG+ l + +h eav+al+g+g+ v++ v+ KIAA0147 772 AG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGT-AVQMRVW 812 PF00595.14.ls: domain 2 of 4, from 862 to 947: score 80.9, E = 3.8e-21 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea l + + glGfsi+gg++ + + +d gifvs++ +G gaA++ KIAA0147 862 VACLAR--SERGLGFSIAGGKGSTPyragDAGIFVSRIAEG-GAAHR 905 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +G Lq+GD++ls+NG+d++ +h+ av +l+ ++ +++L+++ KIAA0147 906 AGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASP-TIALLLE 947 PF00595.14.fs: domain 2 of 4, from 871 to 947: score 79.2, E = 1.3e-21 *->glGfsikggsdkga....dkgifvsevlpGsgaAeagGrLqaGDqIl glGfsi+gg++ + + +d gifvs++ +G gaA+++G Lq+GD++l KIAA0147 871 GLGFSIAGGKGSTPyragDAGIFVSRIAEG-GAAHRAGTLQVGDRVL 916 svNGqdlenlsheeavlalkgsggsevtLtvl<-* s+NG+d++ +h+ av +l+ ++ +++L+++ KIAA0147 917 SINGVDVTEARHDHAVSLLTAASP-TIALLLE 947 PF00595.14.fs: domain 3 of 4, from 1004 to 1090: score 94.5, E = 6.4e-26 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA e++l++ +g+lG+si+ggsd+++++ + +++g+f+s+vlp g A KIAA0147 1004 EIRLPR--AGGPLGLSIVGGSDHSShpfgvqEPGVFISKVLPR-GLA 1047 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++G L++GD+Il+vNGqd+++ +h eav al +++ e++L+v+ KIAA0147 1048 ARSG-LRVGDRILAVNGQDVRDATHQEAVSALLRPCL-ELSLLVR 1090 PF00595.14.ls: domain 3 of 4, from 1004 to 1090: score 96.5, E = 7.5e-26 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA e++l++ +g+lG+si+ggsd+++++ + +++g+f+s+vlp g A KIAA0147 1004 EIRLPR--AGGPLGLSIVGGSDHSShpfgvqEPGVFISKVLPR-GLA 1047 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++G L++GD+Il+vNGqd+++ +h eav al +++ e++L+v+ KIAA0147 1048 ARSG-LRVGDRILAVNGQDVRDATHQEAVSALLRPCL-ELSLLVR 1090 PF00595.14.ls: domain 4 of 4, from 1100 to 1189: score 70.2, E = 5.9e-18 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga e+ ++k +++lG+si+gg ++a+++++++d+gif+s+v+p ga KIAA0147 1100 ELCIQKA-PGERLGISIRGGARGHAgnprdptDEGIFISKVSPT-GA 1144 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* A ++GrL++G ++l+vN+q+l +l+h eav++l++ g+ ++t++v KIAA0147 1145 AGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGD-TLTVLVC 1189 PF00595.14.fs: domain 4 of 4, from 1100 to 1189: score 68.3, E = 1.6e-18 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga e+ ++k +++lG+si+gg ++a+++++++d+gif+s+v+p ga KIAA0147 1100 ELCIQKA-PGERLGISIRGGARGHAgnprdptDEGIFISKVSPT-GA 1144 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* A ++GrL++G ++l+vN+q+l +l+h eav++l++ g+ ++t++v KIAA0147 1145 AGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGD-TLTVLVC 1189 //