hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18363464/chunk_1/iprscan-20080501-18363464.nocrc
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Query sequence: KIAA0145
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 345.0    4.9e-99   1
SM00046                                                 222.2    4.5e-62   1
SM00109                                                 123.3    2.7e-32   2
SM00454                                                  89.7    3.4e-22   1
SM00233                                                  72.0    7.5e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00233      1/1      38   132 ..     1    82 []    72.0  7.5e-17
SM00109      1/2     148   197 ..     1    61 []    69.9  3.2e-16
SM00109      2/2     220   270 ..     1    61 []    53.4  2.9e-11
SM00046      1/1     305   430 ..     1   157 []   222.2  4.5e-62
SM00045      1/1     747   904 ..     1   195 []   345.0  4.9e-99
SM00454      1/1    1126  1192 ..     1    67 []    89.7  3.4e-22

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 38 to 132: score 72.0, E = 7.5e-17
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk..kpkgsipLsg
                      +ikeG L+k+ +++++ k+ryf L++++L+y k  ++    +++L++
    KIAA0145    38    IIKEGMLTKQNnsFqRSKRRYFKLRGRTLYYAKTAksIIFDEVDLTD 84   

                   csvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka<-
                   +sv e+  ++ +++F+++t+ r l+l+A++ +e+e+W++al+ ++++   
    KIAA0145    85 ASVAEsStknvnnSFTVITpCRKLILCADNRKEMEDWIAALKTVQNRE   132  

                   *
                    
    KIAA0145     -   -    

SM00109: domain 1 of 2, from 148 to 197: score 69.9, E = 3.2e-16
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H++++ ++ +pt+C+vCr+ ++g+      s+gl+C++Ck+k+Hk+C
    KIAA0145   148    HNWYACSHaRPTYCNVCREALSGVT-----SHGLSCEVCKFKAHKRC 189  

                   aekvpaqshksglsC<-*
                   a+++++       +C   
    KIAA0145   190 AVRATN-------NC    197  

SM00109: domain 2 of 2, from 220 to 270: score 53.4, E = 2.9e-11
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H++ +++ + +++C vC+k+++++ +     q +rC +Ck ++H +C
    KIAA0145   220    HQWLEGNLpVSAKCTVCDKTCGSVLR----LQDWRCLWCKAMVHTSC 262  

                   aekvpaqshksglsC<-*
                   +e ++         C   
    KIAA0145   263 KESLLT-------KC    270  

SM00046: domain 1 of 1, from 305 to 430: score 222.2, E = 4.5e-62
                   *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp
                      plLVfvN+kSG++qg+       k+lr+f +lLnp+qVfdl++ ggp
    KIAA0145   305    PLLVFVNSKSGDNQGV-------KFLRRFKQLLNPAQVFDLMN-GGP 343  

                   dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq
                   + gl+l f+++++f          r+lvcGGDG vgwVl+ +d ++l++q
    KIAA0145   344 HLGLRL-FQKFDTF----------RILVCGGDGSVGWVLSEIDSLNLHKQ 382  

                   cqvedrefpePPvailPlGTGNdLarvLgwgggydginekllkilkeale
                   cq          +++lPlGTGNdLarvLgwg ++d+  +++l++ +e+le
    KIAA0145   383 CQ----------LGVLPLGTGNDLARVLGWGSACDD--DTQLPQILEKLE 420  

                   eadtvkldrW<-*
                   +a+t++ldrW   
    KIAA0145   421 RASTKMLDRW    430  

SM00045: domain 1 of 1, from 747 to 904: score 345.0, E = 4.9e-99
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                      +MNNYF+iG+DAki+L+F+n+R+++Pek++SR+kN++wY+ lGtkel
    KIAA0145   747    VMNNYFGIGLDAKISLDFNNKRDEHPEKCRSRTKNMMWYGVLGTKEL 793  

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                   ++rt+K+L++++ LecDG++i lp    sl+GI+vLNIPSy+GGtn+WG+
    KIAA0145   794 LHRTYKNLEQKVLLECDGRPIPLP----SLQGIAVLNIPSYAGGTNFWGG 839  

                   PfgskkkravcgifkksftdkedlnfekqsidDgllEVVGvtgamhmaqv
                                      +ked++f+ +s+dD++lEVV+v+g+m+ma +
    KIAA0145   840 -------------------TKEDDTFAAPSFDDKILEVVAVFGSMQMAVS 870  

                   rtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQVDGEP<-
                   r   +++l+         ++RiaQC++v++   il+++ +P+QVDGE+  
    KIAA0145   871 R---VIRLQ---------HHRIAQCRTVKI--SILGDEGVPVQVDGEA   904  

                   *
                    
    KIAA0145     -   -    

SM00454: domain 1 of 1, from 1126 to 1192: score 89.7, E = 3.4e-22
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      v+ w  e+Va+WLe++ l++Y+d+F+++ i g+ell+l+ + dLk+l
    KIAA0145  1126    VHlWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLE-RRDLKDL 1171 

                   GitllGhRkkIlsaiqklkeq<-*
                   G+t++Gh k+Il++i++l  +   
    KIAA0145  1172 GVTKVGHMKRILCGIKELSRS    1192 

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