# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01767.fasta.huge -Q ../query/KIAA0145.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0145, 1198 aa vs ./tmplib.23147 library 1986307 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.5820+/-0.00612; mu= 10.4307+/- 0.417 mean_var=151.7228+/-36.073, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.104124 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0718 ( 742 res) hk01073 ( 742) 463 82.0 3.6e-16 KIAA1022 ( 1131 res) fg00613 (1131) 212 44.5 0.00011 KIAA1650 ( 797 res) hk02174 ( 797) 175 38.8 0.004 >>KIAA0718 ( 742 res) hk01073 (742 aa) initn: 1078 init1: 414 opt: 463 Z-score: 382.1 bits: 82.0 E(): 3.6e-16 Smith-Waterman score: 708; 36.667% identity (56.061% similar) in 330 aa overlap (146-430:181-500) 120 130 140 150 160 170 KIAA01 KEMEDWIAALKTVQNREHFEPTQYSMDHFSGMHNWYACSHARPTYCNVCREALSGVTSHG :.: : .:.:::.: . : :: ..: KIAA07 TVSLEEWIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNKPAYCNLCLNMLIGVGKQG 160 170 180 190 200 210 180 190 200 210 220 230 KIAA01 LSCEVCKFKAHKRCAVRATNNCKWTTLASIGKDIIEDADGIAMPHQWLEGNLPVSAKCTV : : ::. .:.::..:: .: : . : ...: .: : :.::: : .:: KIAA07 LCCSFCKYTVHERCVARAPPSCIKTYVKSK-----RNTD--VMHHYWVEGNCP--TKCDK 220 230 240 250 260 240 250 260 270 280 KIAA01 CDKTCGSVLRLQDWRCLWCKAMVHTSCKESLLTKCPLGLCKVSVIPPTAL---------- : :: : .:.::. .:..: : .: : : ..:::.. KIAA07 CHKTVKCYQGLTGLHCVWCQITLHNKCASHLKPECDCGPLKDHILPPTTICPVVLQTLPT 270 280 290 300 310 320 290 300 310 KIAA01 -----------------------------------NSIDSDGFWKASCPPSCTSPLLVFV ::. :: : : :::::: KIAA07 SGVSVPEERQSTVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGTHPLLVFV 330 340 350 360 370 380 320 330 340 350 360 370 KIAA01 NSKSGDNQGVKFLRRFKQLLNPAQVFDLMNGGPHLGLRLFQKFDTFRILVCGGDGSVGWV : ::: .:: .. :.:. :::: ::..: ..:: :: .:. ::.:.:::::.:::: KIAA07 NPKSGGKQGERIYRKFQYLLNPRQVYSLSGNGPMPGLNFFRDVPDFRVLACGGDGTVGWV 390 400 410 420 430 440 380 390 400 410 420 430 KIAA01 LSEIDSLNLHKQCQLGVLPLGTGNDLARVLGWGSACDDDTQLPQILEKLERASTKMLDRW :. :.. :. :. ...::::::::::: : ::.. . .. : .::. .: .. ::::: KIAA07 LDCIEKANVGKHPPVAILPLGTGNDLARCLRWGGGYEGEN-LMKILKDIENSTEIMLDRW 450 460 470 480 490 500 440 450 460 470 480 490 KIAA01 SVMAYEAKLPRQASSSTVTEDFSEDSEVQQILFYEDSVAAHLSKILTSDQHSVVISSAKV KIAA07 KFEVIPNDKDEKGDPVPYSIINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFE 510 520 530 540 550 560 >>KIAA1022 ( 1131 res) fg00613 (1131 aa) initn: 264 init1: 202 opt: 212 Z-score: 176.1 bits: 44.5 E(): 0.00011 Smith-Waterman score: 235; 23.964% identity (49.704% similar) in 338 aa overlap (888-1189:798-1128) 860 870 880 890 900 KIAA01 VVAVFGSMQMAVSRVIRLQHHRIAQCRTVKISILGDEG------VPVQVDGEAWV--QPP :: :..:: : .::.:.. .:: KIAA10 VADSGIEEVDSRSSSDHHLETTSTISTVSSISTLSSEGGENVDTCTVYADGQAFMVDKPP 770 780 790 800 810 820 910 920 930 940 950 960 KIAA01 GYIR-----IVHKNRAQTLTRDRAFESTLKSWEDKQKCELPRPPSCSLHPEMLSEEEATQ . :.::. : : .: : . :. : :: : .: : . . KIAA10 VPPKPKMKPIIHKSNA--LYQDALVEEDVDSFVIPPPA--PPPPPGSAQPGMAKVLQPRT 830 840 850 860 870 880 970 980 990 1000 1010 KIAA01 MDQFGQA--------AGVLIHSIREIAQSHRDMEQELAHAVNASSKSMDRVYGKPRTTEG .:.. .: . : :. . ..:..: . ....: .: .. . KIAA10 SKLWGDVTEIKSPILSGPKANVISELNSILQQMNRE---KLAKPGEGLDSPMGAKSASLA 890 900 910 920 930 940 1020 1030 1040 1050 1060 KIAA01 LNCSFVLEMVNNFRALRSETELL--LSGKMALQLDPPQKEQLGSALAEMDRQL------- .. ... :. . : ..:: ::. :. :. . . KIAA10 PRSPEIMSTISGTRSTTVTFTVRPGTSQPITLQSRPPDYESRTSGTRRAPSPVVSPTEMN 950 960 970 980 990 1000 1070 1080 1090 1100 1110 1120 KIAA01 RRLADTPWLCQSAEPGDEESVMLDLAKRSRSGKFRLVTKFKKEKNNKNKEAHSSLGA--- .. .: .: :. : ...: .. :: . .. . .. . . .. .. KIAA10 KETLPAPLSAATASPSPALSDVFSLPSQPPSGDLFGLNPAGRSRSPSPSILQQPISNKPF 1010 1020 1030 1040 1050 1060 1130 1140 1150 1160 1170 1180 KIAA01 ---PVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSELLHLERRDLKDLGVTKVGHMKR ::::: .:: ::: :.: :.:. : ..: ::.: .:...:: :::::.::: KIAA10 TTKPVHLWTKPDVADWLESLNLGEHKEAFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMN 1070 1080 1090 1100 1110 1120 1190 KIAA01 ILCGIKELSRSAPAVEA : ..:.: KIAA10 IERALKQLLDR 1130 >>KIAA1650 ( 797 res) hk02174 (797 aa) initn: 222 init1: 168 opt: 175 Z-score: 147.9 bits: 38.8 E(): 0.004 Smith-Waterman score: 175; 39.706% identity (70.588% similar) in 68 aa overlap (1125-1192:730-797) 1100 1110 1120 1130 1140 1150 KIAA01 RSRSGKFRLVTKFKKEKNNKNKEAHSSLGAPVHLWGTEEVAAWLEHLSLCEYKDIFTRHD :..::. .:. ::: . : :..: : :. KIAA16 SRSPSPSPLPSPASGPGPGAPGPRRPFQQKPLQLWSKFDVGDWLESIHLGEHRDRFEDHE 700 710 720 730 740 750 1160 1170 1180 1190 KIAA01 IRGSELLHLERRDLKDLGVTKVGHMKRILCGIKELSRSAPAVEA :.:..: : . :. .::::.::: : ....:. : KIAA16 IEGAHLPALTKDDFVELGVTRVGHRMNIERALRQLDGS 760 770 780 790 1198 residues in 1 query sequences 1986307 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:09:16 2008 done: Thu Dec 18 15:09:17 2008 Total Scan time: 0.740 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]