hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18313776/chunk_1/iprscan-20080501-18313776.nocrc
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Query sequence: KIAA0142
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 170.9    1.3e-46   1
SM00326                                                 100.9    1.5e-25   1
SM00233                                                  47.5    1.7e-09   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00326     1/1     165   220 ..     1    58 []   100.9  1.5e-25
SM00325     1/1     253   428 ..     1   211 []   170.9  1.3e-46
SM00233     1/1     458   558 ..     1    82 []    47.5  1.7e-09

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 165 to 220: score 100.9, E = 1.5e-25
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       +v+A+++++ +nedELsF+kGD+i+v++ +++gWweG+ln  G++G
    KIAA0142   165    LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLN--GRTG 209  

                   lfPsnYVeeie<-*
                   +fPsnYV+e++   
    KIAA0142   210 WFPSNYVREVK    220  

SM00325: domain 1 of 1, from 253 to 428: score 170.9, E = 1.3e-46
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      vl+ +l+TE +Y ++L++++ ++l+pL+ ++       ls   +  l
    KIAA0142   253    VLQNILETENEYSKELQTVLSTYLRPLQTSE------KLSSANISYL 293  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   +g N+eei++f++ + ++Lee+ ++ +                ++r+g +
    KIAA0142   294 MG-NLEEICSFQQMLVQSLEECTKLPE---------------AQQRVGGC 327  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   Fl+l  +++++ +Y +Yc+nhp+a+++l++     +++++ +f++   ++
    KIAA0142   328 FLNL--MPQMKTLYLTYCANHPSAVNVLTE-----HSEELGEFMETKGAS 370  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   ++ +      l L++ L+kP+ Rl kYp LLkel++h+++ h dr+d++k
    KIAA0142   371 SPGI------LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQK 414  

                   AleaikelasqvNe<-*
                     +a k+l +q++e   
    KIAA0142   415 SMAAFKNLSAQCQE    428  

SM00233: domain 1 of 1, from 458 to 558: score 47.5, E = 1.7e-09
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk......kpkgsi
                      v++  ++l++  +++   +ry+ Lf++vLl    +++ ++  ++g++
    KIAA0142   458    VTYMSQVLIQCagSeEKNERYLLLFPNVLLMLSASprmsgfIYQGKL 504  

                   pLsgcsvre.p.......cFeivt.dr.tlllqAeseeereeWvealqsa
                   p +g+++++ +++++++++Fei+ +  +++l++++++++++eWve+lq+ 
    KIAA0142   505 PTTGMTITKlEdsenhrnAFEISGsMIeRILVSCNNQQDLQEWVEHLQKQ 554  

                   iaka<-*
                   ++     
    KIAA0142   555 TKVT    558  

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