hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18264119/chunk_1/iprscan-20080501-18264119.nocrc
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Query sequence: KIAA0139
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00088                                                  75.3    7.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00088    1/1     432   512 ..     1    92 []    75.3  7.6e-18

Alignments of top-scoring domains:
SM00088: domain 1 of 1, from 432 to 512: score 75.3, E = 7.6e-18
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      q+v++Lq++ +++ l+q+s++Y +si++s+l +l+++  ++++E+ +
    KIAA0139   432    QYVPQLQNNTILRLLQQVSQIY-QSIEFSRLTSLVPFVDAFQLERAI 477  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   ++a r++ ++ +ID+ +++++f+++           ++a+r ++    
    KIAA0139   478 VDAARHCDLQVRIDHTSRTLSFGSD----------LNYATREDAP    512  

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