hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18201254/chunk_1/iprscan-20080501-18201254.nocrc
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Query sequence: KIAA0135
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TIGR00229   sensory_box: PAS domain S-box                25.7    5.5e-05   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TIGR00229     1/1     138   265 ..     1   130 []    25.7  5.5e-05

Alignments of top-scoring domains:
TIGR00229: domain 1 of 1, from 138 to 265: score 25.7, E = 5.5e-05
                   *->reseeryraifesspdaiivvdleGn.ilyvnpafeelfGysaeell
                        s  ++ a + + + ai++vd + ++il +n++++ l+Gys+++l+
    KIAA0135   138    GWSSPLLPAPVCNPNKAIFTVDAKTTeILVANDKACGLLGYSSQDLI 184  

                   GrnvlelipeedreelrerierlletgerepvseerrvlgrrkdGseiwv
                   G+++++++   d ++++++ e++ e+ ++  v   + v  +++ G++i+v
    KIAA0135   185 GQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIITRSGEKIPV 234  

                   evsvspirdsnggvlgvlgivrDiterkeaeeal<-*
                    v   ++r   ++++    +v +  er+ +  a+   
    KIAA0135   235 SVWMKRMR---QERRLCCVVVLEPVERVSTWVAF    265  

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