hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18201254/chunk_1/iprscan-20080501-18201254.nocrc
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Query sequence: KIAA0135
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 240.5    1.4e-67   1
SM00091                                                  66.0    4.6e-15   2
SM00219                                                 -67.2    5.6e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00091    1/2     142   209 ..     1    68 []    43.3  3.2e-08
SM00091    2/2     356   423 ..     1    68 []    22.7     0.05
SM00219    1/1    1020  1277 ..     1   280 []   -67.2  5.6e-07
SM00220    1/1    1020  1279 ..     1   231 []   240.5  1.4e-67

Alignments of top-scoring domains:
SM00091: domain 1 of 2, from 142 to 209: score 43.3, E = 3.2e-08
                   *->erlraileslpdgiivld.ldGrilyaNpaaeellGyspeeliGksl
                      + l a + + + +i+ +d  + +il aN++a+ llGys ++liG+ l
    KIAA0135   142    PLLPAPVCNPNKAIFTVDaKTTEILVANDKACGLLGYSSQDLIGQKL 188  

                   lelihpedrlleevqe.lqrlla<-*
                   ++++ + d   + v++  +++++   
    KIAA0135   189 TQFFLRSDS--DVVEAlSEEHME    209  

SM00091: domain 2 of 2, from 356 to 423: score 22.7, E = 0.05
                   *->erlraileslpdgiivldldGrilyaNpaaeellG.yspeeliGksl
                       r +  +  +  g+i l +dG+i  +N++++  l +y + el+Gk++
    KIAA0135   356    YRASVWVFCTISGLITLLPDGTIHGINHSFALTLFgYGKTELLGKNI 402  

                   lelihpedrlleevqe.lqrlla<-*
                   + li+  +    + ++   +l+    
    KIAA0135   403 TFLIPGFYS--YMDLAyNSSLQL    423  

SM00219: domain 1 of 1, from 1020 to 1277: score -67.2, E = 5.6e-07
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...........
                       +    LG+GaFG V+ ++ k+++ eV VK +k+++  ++   ++++
    KIAA0135  1020    YSTMSPLGSGAFGFVWTAVDKeknKEVVVKFIKKEKvledcwiedpk 1066 

                   keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmE.yme
                   +     E+ i++++  +H Ni+k l +   +       +   +vmE++ +
    KIAA0135  1067 LGKVTLEIAILSRV--EHANIIKVLDIFENQ-------GFFQLVMEkHGS 1107 

                   gGdLldyLrknrpklslsdLlsfAlQIAkG.......MeYLesknfvHRD
                   g dL  ++ +++p+l  +   ++  Q+ +G+++  +   YL  k ++HRD
    KIAA0135  1108 GLDLFAFI-DRHPRLDEPLASYIFRQVRAGqsrlvsaVGYLRLKDIIHRD 1156 

                   LAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktll
                   +   N+ ++e++++K  DFG + +l+ +      k  Y+     +g    
    KIAA0135  1157 IKDENIVIAEDFTIKLIDFGSAAYLERG------KLFYTF----CGT--- 1193 

                   PirWmAPEsl.........kdgkFtskSDVWSFGVlLWEiftlGeqPYpg
                    i  +APE+l +++ ++++ +         WS GV+L+  + + e P  +
    KIAA0135  1194 -IEYCAPEVLmgnpyrgpeLEM--------WSLGVTLY-TLVFEENPFCE 1233 

                   eiqqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaed
                             + e +++      P++         ++el +l +   +  
    KIAA0135  1234 ----------LEETVEAA---IHPPYL-------VSKELMSLVSGLLQPV 1263 

                   PedRPtFselverl<-*
                   Pe R t + lv +    
    KIAA0135  1264 PERRTTLEKLVTDP    1277 

SM00220: domain 1 of 1, from 1020 to 1279: score 240.5, E = 1.4e-67
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..............
                      Y  + +lG+GaFG V+ a+dk+ +++v +K ik+++  ++   ++++
    KIAA0135  1020    YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKkekvledcwiedpk 1066 

                   .erilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdll
                     ++  Ei+iL++  H NI+k +d+fe+++++ lVmE  +  + dLf ++
    KIAA0135  1067 lGKVTLEIAILSRvEHANIIKVLDIFENqGFFQLVMEKHGS-GLDLFAFI 1115 

                   kkrgrrglrkvlsE.earfyfrQ.......ilsaLeYLHsqgIiHRDLKP
                   ++++r      l+E+ a ++frQ + ++++++sa+ YL  + IiHRD+K 
    KIAA0135  1116 DRHPR------LDEpLASYIFRQvragqsrLVSAVGYLRLKDIIHRDIKD 1159 

                   eNiLLds..hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgk
                   eNi + ++ ++Kl+DFG+A+ l++++  +tf+GT eY+APEvl +++Y +
    KIAA0135  1160 ENIVIAEdfTIKLIDFGSAAYLergklfYTFCGTIEYCAPEVLmgnPYRG 1209 

                   pavDiWSlGcilyElltGkpPFp....qldlifkkig..SpeakdLikkl
                   p+  +WSlG++ly l+  + PF++ ++++++ ++     S+e+ +L+++l
    KIAA0135  1210 PELEMWSLGVTLYTLVFEENPFCeleeTVEAAIHPPYlvSKELMSLVSGL 1259 

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   L+  Pe+R t +++ +       +P++   
    KIAA0135  1260 LQPVPERRTTLeKLVT-------DPWV    1279 

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