hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18201254/chunk_1/iprscan-20080501-18201254.nocrc
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Query sequence: KIAA0135
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00069.15.ls Protein kinase domain                          231.8    1.4e-66   1
PF00069.15.fs Protein kinase domain                          229.9    5.1e-66   1
PF00989.14.fs PAS fold                                        18.8    3.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00989.14.fs   1/1     154   256 ..    14   123 .]    18.8  3.5e-05
PF00069.15.fs   1/1    1020  1279 ..     1   287 []   229.9  5.1e-66
PF00069.15.ls   1/1    1020  1279 ..     1   287 []   231.8  1.4e-66

Alignments of top-scoring domains:
PF00989.14.fs: domain 1 of 1, from 154 to 256: score 18.8, E = 3.5e-05
                   *->gifvvDvedGrilyvNaaaeellGlsreeviGkslldlipeeddaec
                      +if vD + ++il +N++a+ llG+s +++iG+ l  ++   d++  
    KIAA0135   154    AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV- 199  

                   lvaelllqaleqgee..rgvevsfrvsgqrflvrdgrpihvevraspvrd
                    v +l ++++e+ ++    +++ ++        r g+ i+v v+++ +r 
    KIAA0135   200 -VEALSEEHMEADGHaaVVFGTVVDI-----ITRSGEKIPVSVWMKRMRQ 243  

                   aggeilgflgvlrDi<-*
                   +  ++l+ ++vl ++   
    KIAA0135   244 E--RRLCCVVVLEPV    256  

PF00069.15.fs: domain 1 of 1, from 1020 to 1279: score 229.9, E = 5.1e-66
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y + ++lGsG+fG V+ a++k  +k+V+vK ikk+k  +++++++ +
    KIAA0135  1020    YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPK 1066 

                   l....sEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfd
                   l++ + Ei+il r+ H NI++ +d+fe+ +   lV+E ++ G   ldLf+
    KIAA0135  1067 LgkvtLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSG---LDLFA 1113 

                   ylsetrrkgpllfsedeakkialQi.......lrgleYLHsngiiHRDLK
                   ++    r+ +l  +e  a  i++Q++ ++++ ++++ YL  + iiHRD+K
    KIAA0135  1114 FID---RHPRL--DEPLASYIFRQVragqsrlVSAVGYLRLKDIIHRDIK 1158 

                   PeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl
                    eNI + ++ ++    K++DFG+A+   ++++  ++tf+GT++Y+APEvl
    KIAA0135  1159 DENIVIAEDFTI----KLIDFGSAAY--LeRGKlFYTFCGTIEYCAPEVL 1202 

                   lggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpp
                   +g+++ g++  +WSlGv+ly l++ + PF++         + ++   +pp
    KIAA0135  1203 MGNPYRGPELEMWSLGVTLYTLVFEENPFCEL-------EETVEAAIHPP 1245 

                   lefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqH
                   +  +                   +e+ +L++++L++ P++R t e ++ +
    KIAA0135  1246 YLVS-------------------KELMSLVSGLLQPVPERRTTLEKLVTD 1276 

                   Pwf<-*
                   Pw+   
    KIAA0135  1277 PWV    1279 

PF00069.15.ls: domain 1 of 1, from 1020 to 1279: score 231.8, E = 1.4e-66
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      y + ++lGsG+fG V+ a++k  +k+V+vK ikk+k  +++++++ +
    KIAA0135  1020    YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPK 1066 

                   l....sEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfd
                   l++ + Ei+il r+ H NI++ +d+fe+ +   lV+E ++ G   ldLf+
    KIAA0135  1067 LgkvtLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSG---LDLFA 1113 

                   ylsetrrkgpllfsedeakkialQi.......lrgleYLHsngiiHRDLK
                   ++    r+ +l  +e  a  i++Q++ ++++ ++++ YL  + iiHRD+K
    KIAA0135  1114 FID---RHPRL--DEPLASYIFRQVragqsrlVSAVGYLRLKDIIHRDIK 1158 

                   PeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl
                    eNI + ++ ++    K++DFG+A+   ++++  ++tf+GT++Y+APEvl
    KIAA0135  1159 DENIVIAEDFTI----KLIDFGSAAY--LeRGKlFYTFCGTIEYCAPEVL 1202 

                   lggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpp
                   +g+++ g++  +WSlGv+ly l++ + PF++         + ++   +pp
    KIAA0135  1203 MGNPYRGPELEMWSLGVTLYTLVFEENPFCEL-------EETVEAAIHPP 1245 

                   lefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqH
                   +  +                   +e+ +L++++L++ P++R t e ++ +
    KIAA0135  1246 YLVS-------------------KELMSLVSGLLQPVPERRTTLEKLVTD 1276 

                   Pwf<-*
                   Pw+   
    KIAA0135  1277 PWV    1279 

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