hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18183541/chunk_1/iprscan-20080501-18183541.nocrc
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Query sequence: KIAA0134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 112.2      6e-29   1
SM00490                                                  45.5    7.2e-09   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     159   352 ..     1   219 []   112.2    6e-29
SM00490      1/1     300   422 ..     1    86 []    45.5  7.2e-09

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 159 to 352: score 112.2, E = 6e-29
                   *->gf.klrpyQk..eaipwlleg..........rdvilaapTGsGKTla
                       f++l + Q++++a+p++  g++  ++ +++++v++a++TG+GK+++
    KIAA0134   159    AFgRLAKLQRerAALPIAQYGnrilqtlkehQVVVVAGDTGCGKSTQ 205  

                   fllpllellkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslg
                    +++ll ++ ++            v +++P+r++++ +a+++        
    KIAA0134   206 VPQYLLAAGFSH------------VACTQPRRIACISLAKRVG------- 236  

                   vyfvevlkvvglygG.sktkekeqlrklksgkt.dilvtTpgrLldll.n
                         +++++ yg++     ++++ + ++ ++++i++ T g Ll+ +++
    KIAA0134   237 ------FESLSQYGSqVG---YQIRFESTRSAAtKIVFLTVGLLLRQIqR 277  

                   gkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrq
                   ++  sl++++++i+DE+H++          + d l+++l+rl + +++++
    KIAA0134   278 EP--SLpQYEVLIVDEVHERH--------LHNDFLLgVLQRLlptRPDLK 317  

                   rlllSATppeienllklflnlpelfpnpvfisvgftlepieqf<-*
                   ++l+SAT+ +i  ++++f n      +pv+ ++g+ l+pi++f   
    KIAA0134   318 VILMSATI-NISLFSSYFSN------APVVQVPGR-LFPITVF    352  

SM00490: domain 1 of 1, from 300 to 422: score 45.5, E = 7.2e-09
                   *->delaelLkellkd.pgikvarlHG.....................gl
                      d l   L++ll+++p++kv+ + ++ + +  ++  ++ +  + +++l
    KIAA0134   300    DFLLGVLQRLLPTrPDLKVILMSAtinislfssyfsnapvvqvpgRL 346  

                   sqeeReeilekFrkgkikvLvaTdvaerGlDipgvdlVInydl.......
                    +      ++  + g +k++++T++ae++++i+g+++V++ +  ++ + +
    KIAA0134   347 FPITV---FDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKvkemsyd 393  

                   ...........pwspasyiQRiGRaGRaG<-*
                   ++ + ++ ++ ++s as+ QR GRaGR G   
    KIAA0134   394 pqaklqrlqefWISQASAEQRKGRAGRTG    422  

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