hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18183541/chunk_1/iprscan-20080501-18183541.nocrc
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Query sequence: KIAA0134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF04408.13.fs Helicase associated domain (HA2)              66.7    7.1e-17   1
PF04408.13.ls Helicase associated domain (HA2)              64.8    2.7e-16   1
PF00271.21.fs Helicase conserved C-terminal domain          37.9    1.9e-10   1
PF00271.21.ls Helicase conserved C-terminal domain          26.3    4.9e-05   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00271.21.ls   1/1     331   422 ..     1    76 []    26.3  4.9e-05
PF00271.21.fs   1/1     358   422 ..    30    76 .]    37.9  1.9e-10
PF04408.13.fs   1/1     482   546 ..     1    69 [.    66.7  7.1e-17
PF04408.13.ls   1/1     482   587 .]     1   124 []    64.8  2.7e-16

Alignments of top-scoring domains:
PF00271.21.ls: domain 1 of 1, from 331 to 422: score 26.3, E = 4.9e-05
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                           + +v+ + G+l +      ++    g +k++++T++a+++++
    KIAA0134   331    SSyFSNAPVVQVPGRLFPITV---FDVAPPGVRKCILSTNIAETSVT 374  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   i ++++V++ +  ++ + +++ + ++ ++ + + +s  QR GRaGR G  
    KIAA0134   375 IDGIRFVVDSGKvkemsydpqaklqrlqefWISQASAEQRKGRAGRTG   422  

                   *
                    
    KIAA0134     -   -    

PF00271.21.fs: domain 1 of 1, from 358 to 422: score 37.9, E = 1.9e-10
                   *->gkskvLvaTdvagrGiDipdvnlVInydl..................
                      g +k++++T++a+++++i ++++V++ +  ++ + +++ + ++ ++ 
    KIAA0134   358    GVRKCILSTNIAETSVTIDGIRFVVDSGKvkemsydpqaklqrlqef 404  

                   pwnpesyiQRiGRaGRaG<-*
                   + + +s  QR GRaGR G   
    KIAA0134   405 WISQASAEQRKGRAGRTG    422  

PF04408.13.fs: domain 1 of 1, from 482 to 546: score 66.7, E = 7.1e-17
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                      +A+  L+  gAl Ds+++LT p+G l+a+lP+d+ +gkmL +l+  f
    KIAA0134   482    TAILYLRDQGAL-DSSEALT-PIGSLLAQLPVDVVIGKML-ILGSMF 525  

                   gcldealiiaaiLsvrgepfvn<-*
                    +++++l+iaa+Lsv ++pf +   
    KIAA0134   526 SLVEPVLTIAAALSV-QSPFTR    546  

PF04408.13.ls: domain 1 of 1, from 482 to 587: score 64.8, E = 2.7e-16
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                      +A+  L+  gAl Ds+++LT p+G l+a+lP+d+ +gkmL +l+  f
    KIAA0134   482    TAILYLRDQGAL-DSSEALT-PIGSLLAQLPVDVVIGKML-ILGSMF 525  

                   gcldealiiaaiLsvrgepfvntGvD.....R.d.aqrlpldksekakrW
                    +++++l+iaa+Lsv ++pf + ++ ++++  +++a              
    KIAA0134   526 SLVEPVLTIAAALSV-QSPFTR-SAQsspecCtPpA-------------- 559  

                   NiSrdlarakfegrsllksars.r.lts.lsDhlall<-*
                      + la  ++      + +rs r++t+++ +  + +   
    KIAA0134   560 ---SSLAAPRC------CTHRSwRpATAtEAETTRTR    587  

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