hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan_v890/data/Pfam Sequence file: /cdna/full/goal/ha/ha01449s1/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: ha01449s1 637 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 343.3 2.6e-99 6 BACK BTB And C-terminal Kelch 162.7 6.3e-45 1 Kelch_2 Kelch motif 142.8 6e-39 6 BTB BTB/POZ domain 139.9 4.4e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 80 192 .. 1 135 [] 139.9 4.4e-38 BACK 1/1 197 299 .. 1 103 [] 162.7 6.3e-45 Kelch_1 1/6 328 372 .. 1 45 [] 29.4 8.5e-05 Kelch_2 1/6 328 372 .. 1 54 [] 11.3 8.1 Kelch_1 2/6 374 423 .. 1 45 [] 62.7 8.1e-15 Kelch_2 2/6 374 423 .. 1 54 [] 32.2 1.2e-05 Kelch_1 3/6 425 470 .. 1 45 [] 58.3 1.6e-13 Kelch_2 3/6 425 470 .. 1 54 [] 19.9 0.06 Kelch_1 4/6 472 517 .. 1 45 [] 62.3 1e-14 Kelch_2 4/6 472 517 .. 1 54 [] 18.2 0.19 Kelch_1 5/6 519 564 .. 1 45 [] 72.9 6.6e-18 Kelch_2 5/6 519 564 .. 1 54 [] 26.7 0.00054 Kelch_2 6/6 566 611 .. 1 54 [] 38.9 1.2e-07 Kelch_1 6/6 566 611 .. 1 45 [] 70.5 3.5e-17 Alignments of top-scoring domains: BTB: domain 1 of 1, from 80 to 192: score 139.9, E = 4.4e-38 *->lnelreqgelcDVtLvvgdgsgryd.v.gkkfkAHKavLaacSpYFk +nelr++ +lcDVtL+v+ y + + +f AHK+vLa++Sp+Fk ha01449s1 80 MNELRLSQQLCDVTLQVK-----YQdApAAQFMAHKVVLASSSPVFK 121 alFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdq a+Ft++ e+ ++ ++ +e++ p+++e l+ef+Yt+ +s+ ha01449s1 122 AMFTNG------LREQGME-VVSIEGIHPKVMERLIEFAYTASISMG--- 161 ksPssckseenvedlLalAadllqipslvdkCeefliksl<-* e+ v +++ A ++qi+s+v++C +fl+++l ha01449s1 162 --------EKCVLHVMNGA-VMYQIDSVVRACSDFLVQQL 192 BACK: domain 1 of 1, from 197 to 299: score 162.7, E = 6.3e-45 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie ++gI +fA++ gc eL+++A+++i +F eVak+eEF++Ls++qL++ ha01449s1 197 AIGIANFAEQIGCVELHQRAREYIYMHFGEVAKQEEFFNLSHCQLVT 243 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+s+D+LnV++E eVf+A+++Wvk+d e+R+ ++ LL++VR++ L+p++ ha01449s1 244 LISRDDLNVRCESEVFHACINWVKYDCEQRRFYVQALLRAVRCHSLTPNF 293 Llevve<-* L+ +++ ha01449s1 294 LQMQLQ 299 Kelch_1: domain 1 of 6, from 328 to 372: score 29.4, E = 8.5e-05 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + ++ +iY +GGy qsl+ e+Y+p+++tW +l++++ ha01449s1 328 QVMPCRAPKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQ 372 * ha01449s1 - - Kelch_2: domain 1 of 6, from 328 to 372: score 11.3, E = 8.1 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW + +p+ + +g +y GG+ + s+s l ++p++ +W ha01449s1 328 QVMPCRAPKVGRLIYTAGGY---------FRQSLSYLEAYNPSDGTW 365 eklpalp<-* +l++l ha01449s1 366 LRLADLQ 372 Kelch_1: domain 2 of 6, from 374 to 423: score 62.7, E = 8.1e-15 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp pRsg + +v++g++Y++GG+++++++++ ++ ++Y+p+tn+W++++ ha01449s1 374 PRSGLAGCVVGGLLYAVGGRNNspdgnTDSSALDCYNPMTNQWSPCA 420 smp<-* +m+ ha01449s1 421 PMS 423 Kelch_2: domain 2 of 6, from 374 to 423: score 32.2, E = 1.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr++ a +v+gg ly vGG+ ++++g+ +ss l +++p tn+W ha01449s1 374 PRSGLAGCVVGGLLYAVGGR----NNSPDGNTDSSALDCYNPMTNQW 416 eklpalp<-* ++++++ ha01449s1 417 SPCAPMS 423 Kelch_1: domain 3 of 6, from 425 to 470: score 58.3, E = 1.6e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR + gv v+dg+iY++GG+ g nsve+Y pe ++W+ +++m ha01449s1 425 PRNRIGVGVIDGHIYAVGGSHGcIHHNSVERYEPERDEWHLVAPML 470 -* ha01449s1 - - Kelch_2: domain 3 of 6, from 425 to 470: score 19.9, E = 0.06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr + + v++g +y vGGs +g ++++ ++ pe +W ha01449s1 425 PRNRIGVGVIDGHIYAVGGS--------HGCIHHNSVERYEPERDEW 463 eklpalp<-* + ++++ ha01449s1 464 HLVAPML 470 Kelch_1: domain 4 of 6, from 472 to 517: score 62.3, E = 1e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R g+gv+vl+ ++Y++GG+dg+++lns+e+Y pe n+W++++ m+ ha01449s1 472 RRIGVGVAVLNRLLYAVGGFDGtNRLNSAECYYPERNEWRMITAMN 517 -* ha01449s1 - - Kelch_2: domain 4 of 6, from 472 to 517: score 18.2, E = 0.19 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r ++ ++v++ ly vGG+ +g ++++ ++ pe n+W ha01449s1 472 RRIGVGVAVLNRLLYAVGGF--------DGTNRLNSAECYYPERNEW 510 eklpalp<-* + ++a+ ha01449s1 511 RMITAMN 517 Kelch_1: domain 5 of 6, from 519 to 564: score 72.9, E = 6.6e-18 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< Rsgagv+vl+++iY++GGydg+ lnsve+YD+et tWt++++m+ ha01449s1 519 IRSGAGVCVLHNCIYAAGGYDGqDQLNSVERYDVETETWTFVAPMK 564 -* ha01449s1 - - Kelch_2: domain 5 of 6, from 519 to 564: score 26.7, E = 0.00054 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v+ +++y GG+ +g + ++++ ++d et++W ha01449s1 519 IRSGAGVCVLHNCIYAAGGY--------DGQDQLNSVERYDVETETW 557 eklpalp<-* + +++++ ha01449s1 558 TFVAPMK 564 Kelch_2: domain 6 of 6, from 566 to 611: score 38.9, E = 1.2e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ ++v +g++yv GG+ +g +++++ ++dp+t +W ha01449s1 566 RRSALGITVHQGRIYVLGGY--------DGHTFLDSVECYDPDTDTW 604 eklpalp<-* ++++++ ha01449s1 605 SEVTRMT 611 Kelch_1: domain 6 of 6, from 566 to 611: score 70.5, E = 3.5e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs g++v++g+iYv GGydg+++l+sve+YDp+t+tW++++ m+ ha01449s1 566 RRSALGITVHQGRIYVLGGYDGhTFLDSVECYDPDTDTWSEVTRMT 611 -* ha01449s1 - - //