hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18132020/chunk_1/iprscan-20080501-18132020.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0131 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 204.5 4.7e-60 1 PF00620.17.ls RhoGAP domain 206.5 5.8e-59 1 PF00611.13.fs Fes/CIP4 homology domain 96.2 1.1e-27 1 PF00611.13.ls Fes/CIP4 homology domain 98.1 2.4e-26 1 PF00018.18.fs SH3 domain 59.0 2.3e-15 1 PF00018.18.ls SH3 domain 60.9 3.8e-15 1 PF07653.7.fs Variant SH3 domain 41.8 2.2e-11 1 PF07653.7.ls Variant SH3 domain 43.2 8.2e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00611.13.fs 1/1 18 120 .. 1 107 [] 96.2 1.1e-27 PF00611.13.ls 1/1 18 120 .. 1 107 [] 98.1 2.4e-26 PF00620.17.ls 1/1 517 670 .. 1 155 [] 206.5 5.8e-59 PF00620.17.fs 1/1 517 670 .. 1 155 [] 204.5 4.7e-60 PF00018.18.fs 1/1 745 799 .. 1 59 [] 59.0 2.3e-15 PF00018.18.ls 1/1 745 799 .. 1 59 [] 60.9 3.8e-15 PF07653.7.ls 1/1 746 798 .. 1 69 [] 43.2 8.2e-10 PF07653.7.fs 1/1 746 796 .. 1 66 [. 41.8 2.2e-11 Alignments of top-scoring domains: PF00611.13.fs: domain 1 of 1, from 18 to 120: score 96.2, E = 1.1e-27 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++ +L+ + + +++ll++l++F+r+Ra++E eY++ KIAA0131 18 KEMRWQL--SEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRG 62 Lqklskkyfnkk.RkSdgsvskdsltekgpdslsslkkawnvllsetdql L+kl++++ ++ +R +gs++++++++k+p+ ls+l ++w+vll++t q+ KIAA0131 63 LEKLAERFSSRGgR--LGSSREHQSFRKEPSLLSPL-HCWAVLLQHTRQQ 109 sklHsqlseqL<-* s+ +lse L KIAA0131 110 SRESAALSEVL 120 PF00611.13.ls: domain 1 of 1, from 18 to 120: score 98.1, E = 2.4e-26 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk ++++++l ++++ +L+ + + +++ll++l++F+r+Ra++E eY++ KIAA0131 18 KEMRWQL--SEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRG 62 Lqklskkyfnkk.RkSdgsvskdsltekgpdslsslkkawnvllsetdql L+kl++++ ++ +R +gs++++++++k+p+ ls+l ++w+vll++t q+ KIAA0131 63 LEKLAERFSSRGgR--LGSSREHQSFRKEPSLLSPL-HCWAVLLQHTRQQ 109 sklHsqlseqL<-* s+ +lse L KIAA0131 110 SRESAALSEVL 120 PF00620.17.ls: domain 1 of 1, from 517 to 670: score 206.5, E = 5.8e-59 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+f+ +GL+ EGI+RvsG + r+ e+r+af+rged+ KIAA0131 517 PLVVESCIRFINLNGLQHEGIFRVSGAQLRVSEIRDAFERGEDPLVE 563 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +d +vA++LKl++R+L PL++ +l+ e+++ ++e er+e+ KIAA0131 564 GCTAHDLDSVAGVLKLYFRSLEPPLFPPDLFGELLA-SSELEATAERVEH 612 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +++ll LP + +LryL+ +Ln+ aq+s++N+M+++NLA++FgPtLl+ KIAA0131 613 VSRLLWRLPAPVLVVLRYLFTFLNHLAQYSDENMMDPYNLAVCFGPTLLP 662 ppdgdsad<-* p+g+ + KIAA0131 663 VPAGQDPV 670 PF00620.17.fs: domain 1 of 1, from 517 to 670: score 204.5, E = 4.7e-60 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Pl+ve+Ci+f+ +GL+ EGI+RvsG + r+ e+r+af+rged+ KIAA0131 517 PLVVESCIRFINLNGLQHEGIFRVSGAQLRVSEIRDAFERGEDPLVE 563 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea +d +vA++LKl++R+L PL++ +l+ e+++ ++e er+e+ KIAA0131 564 GCTAHDLDSVAGVLKLYFRSLEPPLFPPDLFGELLA-SSELEATAERVEH 612 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +++ll LP + +LryL+ +Ln+ aq+s++N+M+++NLA++FgPtLl+ KIAA0131 613 VSRLLWRLPAPVLVVLRYLFTFLNHLAQYSDENMMDPYNLAVCFGPTLLP 662 ppdgdsad<-* p+g+ + KIAA0131 663 VPAGQDPV 670 PF00018.18.fs: domain 1 of 1, from 745 to 799: score 59.0, E = 2.3e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +vA ++Y++r+++ELsF++GDv+ ++e+ + +WW+g+ + G KIAA0131 745 VEAVACFAYTGRTAQELSFRRGDVLRLHERASS-DWWRGEHN---GM 787 eGliPsNYVepv<-* +GliP+ Y+++ KIAA0131 788 RGLIPHKYITLP 799 PF00018.18.ls: domain 1 of 1, from 745 to 799: score 60.9, E = 3.8e-15 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +vA ++Y++r+++ELsF++GDv+ ++e+ + +WW+g+ + G KIAA0131 745 VEAVACFAYTGRTAQELSFRRGDVLRLHERASS-DWWRGEHN---GM 787 eGliPsNYVepv<-* +GliP+ Y+++ KIAA0131 788 RGLIPHKYITLP 799 PF07653.7.ls: domain 1 of 1, from 746 to 798: score 43.2, E = 8.2e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a++ y++ + ++e Ls+++Gdv+++ ++ + +ww+ KIAA0131 746 EAVACFAYTG-RTAQE------LSFRRGDVLRLH----ERASSDWWR 781 geslggGrrrRGlvPssaveel<-* ge +G+r Gl+P++++ l KIAA0131 782 GEH--NGMR--GLIPHKYI-TL 798 PF07653.7.fs: domain 1 of 1, from 746 to 796: score 41.8, E = 2.2e-11 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a++ y++ + ++e Ls+++Gdv+++ ++ + +ww+ KIAA0131 746 EAVACFAYTG-RTAQE------LSFRRGDVLRLH----ERASSDWWR 781 geslggGrrrRGlvPssav<-* ge +G+r Gl+P++++ KIAA0131 782 GEH--NGMR--GLIPHKYI 796 //