hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18100643/chunk_1/iprscan-20080501-18100643.nocrc
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Query sequence: KIAA0129
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00449                                                  92.3    5.6e-23   1
SM00589                                                  67.7    1.5e-15   1
SM00336                                                  45.7    6.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00336    1/1      19    61 ..     1    51 []    45.7  6.1e-09
SM00589    1/1     266   318 ..     1    56 []    67.7  1.5e-15
SM00449    1/1     319   442 .]     1   145 []    92.3  5.6e-23

Alignments of top-scoring domains:
SM00336: domain 1 of 1, from 19 to 61: score 45.7, E = 6.1e-09
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++ ++C+eHg +++ae+fC + ++ + C+ C   g H      rgH 
    KIAA0129    19    GCGWRCPEHG-DRVAELFC-RRCRRCVCALCPVLGAH------RGHP 57   

                   vvll<-*
                   v+l    
    KIAA0129    58 VGLA    61   

SM00589: domain 1 of 1, from 266 to 318: score 67.7, E = 1.5e-15
                   *->avdvtLDPdTAhpkLlLSeDrrsVrygdtkqkGsnlpdnPeRFdsyp
                      a   tLDPdT+h++L+LS Dr +Vr+g +       p    RFd+ +
    KIAA0129   266    ARTPTLDPDTMHARLRLSADRLTVRCGLLGS---LGPVPVLRFDALW 309  

                   cVLGsegFs<-*
                   +VL++ +F+   
    KIAA0129   310 QVLARDCFA    318  

SM00449: domain 1 of 1, from 319 to 442: score 92.3, E = 5.6e-23
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                       G+hY+EV+v++ g    w+vG a+ s        rr+     + lG
    KIAA0129   319    TGRHYWEVDVQEAGA--GWWVGAAYASL-------RRRGASAAARLG 356  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   ++ +Sw++  ++  +y+a + g +  l +  + D++G+flD+eag   + 
    KIAA0129   357 CNRQSWCLKRYD-LEYWAFHDGQRSRLRPRDDLDRLGVFLDYEAG--VLA 403  

                   FykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p<
                   Fy +       ++l++f +tf +pLyPa  l+        + + +   p 
    KIAA0129   404 FYDVTGG---MSHLHTFRATFQEPLYPALRLWE-------GAISIPRlP  442  

                   -*
                     
    KIAA0129     -    -    

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