hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18100643/chunk_1/iprscan-20080501-18100643.nocrc
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Query sequence: KIAA0129
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                     77.6    9.2e-22   1
PF00622.18.ls SPRY domain                                     79.4    1.1e-20   1
PF00643.14.ls B-box zinc finger                               47.5    4.1e-11   1
PF00643.14.fs B-box zinc finger                               45.7    5.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00643.14.fs   1/1      19    61 ..     1    50 []    45.7  5.3e-11
PF00643.14.ls   1/1      19    61 ..     1    50 []    47.5  4.1e-11
PF00622.18.fs   1/1     319   440 ..     1   154 []    77.6  9.2e-22
PF00622.18.ls   1/1     319   440 ..     1   154 []    79.4  1.1e-20

Alignments of top-scoring domains:
PF00643.14.fs: domain 1 of 1, from 19 to 61: score 45.7, E = 5.3e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++++CpeHg + +++lFC+ ++ + C++C   g H      rgH v
    KIAA0129    19    GCGWRCPEHG-DRVAELFCRRCRRCVCALCPVLGAH------RGHPV 58   

                   vpl<-*
                    ++   
    KIAA0129    59 GLA    61   

PF00643.14.ls: domain 1 of 1, from 19 to 61: score 47.5, E = 4.1e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++++CpeHg + +++lFC+ ++ + C++C   g H      rgH v
    KIAA0129    19    GCGWRCPEHG-DRVAELFCRRCRRCVCALCPVLGAH------RGHPV 58   

                   vpl<-*
                    ++   
    KIAA0129    59 GLA    61   

PF00622.18.fs: domain 1 of 1, from 319 to 440: score 77.6, E = 9.2e-22
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +G+hY+EV+v+++g+   +w+vG a+ s            +r+g   
    KIAA0129   319    TGRHYWEVDVQEAGA---GWWVGAAYASL-----------RRRGASA 351  

                   ...llGddegswgydgsggkkyhagesgepyglpfqe..kgdviGcflDy
                     +l+++  +sw++   +   y+a++  +  ++ + +++  d+ G+flDy
    KIAA0129   352 aarLGCNR-QSWCLKRYD-LEYWAFH--DGQRSRLRPrdDLDRLGVFLDY 397  

                   eagVtisFt.kNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadg
                   eag  + F+++ G       sh+++Fr +tf     +pLyPa  l+    
    KIAA0129   398 EAG-VLAFYdVTGGM-----SHLHTFR-ATFQ----EPLYPALRLW---- 432  

                   ggeairlnfgqlp<-*
                     +ai +    ++   
    KIAA0129   433 -EGAISI----PR    440  

PF00622.18.ls: domain 1 of 1, from 319 to 440: score 79.4, E = 1.1e-20
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +G+hY+EV+v+++g+   +w+vG a+ s           ++r+ +  
    KIAA0129   319    TGRHYWEVDVQEAGA---GWWVGAAYASL----------RRRGASAA 352  

                   ..llGddegswgydgsggkkyhagesgepyglpfqe..kgdviGcflDye
                    +l+++  +sw++   +   y+a++  +  ++ + +++  d+ G+flDye
    KIAA0129   353 arLGCNR-QSWCLKRYD-LEYWAFH--DGQRSRLRPrdDLDRLGVFLDYE 398  

                   agVtisFt.kNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgg
                   ag  + F+++ G       sh+++Fr +tf     +pLyPa  l+     
    KIAA0129   399 AG-VLAFYdVTGGM-----SHLHTFR-ATFQ----EPLYPALRLW----- 432  

                   geairlnfgqlp<-*
                    +ai +    ++   
    KIAA0129   433 EGAISI----PR    440  

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