# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00496.fasta.huge -Q ../query/KIAA0129.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0129, 442 aa
 vs ./tmplib.23147 library

1987063 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0319+/-0.00568; mu= 14.6154+/- 0.386
 mean_var=124.1289+/-29.362, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.115117

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1113  ( 1131 res)   hj06379(revised)           (1131)  161 38.2  0.0032


>>KIAA1113  ( 1131 res)   hj06379(revised)                (1131 aa)
 initn: 155 init1:  78 opt: 161  Z-score: 149.6  bits: 38.2 E(): 0.0032
Smith-Waterman score: 161;  23.469% identity (53.061% similar) in 196 aa overlap (14-202:267-455)

                                10        20           30        40
KIAA01                  MAGAATGSRTPGRSELVEGCGWR---CPEHGDRVAELFCRRCR
                                     :: : . : :   :: : ..  .:::. : 
KIAA11 CGEWLCKTCIEAHQRVKFTKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCD
        240       250       260       270       280       290      

               50        60        70        80         90         
KIAA01 RCVCALCPVLGAHRGHPVGLALEAAVHVQKLSQECLKQLAIKKQQHID-NITQIEDATEK
       : .:  : .:  :. :   . :: : . :: . : :    ..:....    ::...  ..
KIAA11 RLTCRDCQLL-EHKEHRYQF-LEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKE
        300        310        320       330       340       350    

     100       110        120       130         140       150      
KIAA01 LKANAESSKTWLK-GKFTELRLLLDEEEALAKKF--IDKNTQLTLQVYREQADSCREQLD
       .. . .  .  .: . :: .  .  . ..: ...  . :. :. :   ...  .  .:. 
KIAA11 VNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVK
          360       370       380       390       400       410    

        160       170       180       190       200       210      
KIAA01 IMNDLSNRVWSISQEPDPVQRLQAYTATEQEMQQQMSLGELCHPVPLSFEPVKSFFKGLV
        . ...:  :.:..  . .     :.     .: .  :   : :::              
KIAA11 HVMNFTN--WAIASGSSTA---LLYSKRLITFQLRHILKARCDPVPAANGAIRFHCDPTF
          420         430          440       450       460         

        220       230       240       250       260       270      
KIAA01 EAVESTLQTPLDIRLKESINCQLSDPSSTKPGTLLKTSPSPERSLLLKYARTPTLDPDTM
                                                                   
KIAA11 WAKNVVNLGNLVIESKPAPGYTPNVVVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYA
     470       480       490       500       510       520         




442 residues in 1 query   sequences
1987063 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:08:40 2008 done: Thu Dec 18 15:08:40 2008
 Total Scan time:  0.420 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]