hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18051150/chunk_1/iprscan-20080501-18051150.nocrc
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Query sequence: KIAA0126
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04564.6.fs U-box domain                                   171.7    1.7e-61   1
PF04564.6.ls U-box domain                                   173.6    4.5e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04564.6.fs   1/1     996  1070 ..     1    81 []   171.7  1.7e-61
PF04564.6.ls   1/1     996  1070 ..     1    81 []   173.6  4.5e-49

Alignments of top-scoring domains:
PF04564.6.fs: domain 1 of 1, from 996 to 1070: score 171.7, E = 1.7e-61
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D++DEFlDPI+++LM+DPV+lPS+++t+DRstI+rHLls     d+t
    KIAA0126   996    DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----DQT 1037 

                   DPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   DPf+ R+pLt+d++ PN eLKekI++wl+e++++   
    KIAA0126  1038 DPFN-RSPLTMDQIRPNTELKEKIQRWLAERKQQ    1070 

PF04564.6.ls: domain 1 of 1, from 996 to 1070: score 173.6, E = 4.5e-49
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D++DEFlDPI+++LM+DPV+lPS+++t+DRstI+rHLls     d+t
    KIAA0126   996    DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----DQT 1037 

                   DPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   DPf+ R+pLt+d++ PN eLKekI++wl+e++++   
    KIAA0126  1038 DPFN-RSPLTMDQIRPNTELKEKIQRWLAERKQQ    1070 

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