hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18014977/chunk_1/iprscan-20080501-18014977.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0124 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08145.2.fs BOP1NT (NUC169) domain 618.7 1.8e-204 1 PF08145.2.ls BOP1NT (NUC169) domain 620.6 1.3e-183 1 PF00400.22.ls WD domain, G-beta repeat 136.0 9.5e-38 6 PF00400.22.fs WD domain, G-beta repeat 126.7 6e-35 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08145.2.ls 1/1 80 338 .. 1 267 [] 620.6 1.3e-183 PF08145.2.fs 1/1 80 338 .. 1 267 [] 618.7 1.8e-204 PF00400.22.fs 1/7 339 377 .. 1 38 [] 45.0 1e-11 PF00400.22.ls 1/6 339 377 .. 1 38 [] 47.0 5.8e-11 PF00400.22.fs 4/7 506 542 .. 1 38 [] 12.8 0.012 PF00400.22.fs 5/7 546 584 .. 1 38 [] 15.2 0.0026 PF00400.22.ls 5/6 589 627 .. 1 38 [] 31.7 2.4e-06 PF00400.22.fs 6/7 589 627 .. 1 38 [] 29.7 2.1e-07 PF00400.22.ls 6/6 644 682 .] 1 38 [] 22.5 0.0014 PF00400.22.fs 7/7 644 682 .] 1 38 [] 20.5 8.1e-05 Alignments of top-scoring domains: PF08145.2.ls: domain 1 of 1, from 80 to 338: score 620.6, E = 1.3e-183 *->YDeypHIGYDIdGKKImKparg.daLDdfLdsiddpdgWRgikDkkT YD++pH+GYD+dG++I+Kp r++d+LD+fLd++ddpd+WR+++D++T KIAA0124 80 YDDFPHVGYDLDGRRIYKPLRTrDELDQFLDKMDDPDYWRTVQDPMT 126 GqdVnLTDEeleLIkRiqkgeipdenidPYepiiewFtseteimPlsaaP G+d++LTDE+++L++R+q+g+++d ++PYep++++F+++++i+P++++P KIAA0124 127 GRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRP 176 epKRrFvPSkhEkKKVsKlVhAIrmGwikppekpkereeeekeepkfYDL ++KR+F+PS++Ek+KVs++VhAI+mGwi+p ++p++ + p+fYDL KIAA0124 177 ADKRSFIPSLVEKEKVSRMVHAIKMGWIQP-RRPRDPT------PSFYDL 219 WadddsnatdeerhlmhipAPKlpLPGHeeSYNPPpEYLpteeEkkeWlk Wa++d+na+ + rh+mh+pAPKl+LPGH+eSYNPPpEYL++eeE+ +W++ KIAA0124 220 WAQEDPNAVLG-RHKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAWEQ 268 LlePeeRkrnFiPqKyksLRkVPaYsrfirERFeRCLDLYLcPRvRKnrL +eP eRk+ F+P+K++sLR+VPaY+rfi+ERFeRCLDLYLcPR+RK+r+ KIAA0124 269 -QEPGERKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRV 317 NIDpEsLiPKLPsPkDLqPFP<-* N+DpE+LiPKLP+P+DLqPFP KIAA0124 318 NVDPEDLIPKLPRPRDLQPFP 338 PF08145.2.fs: domain 1 of 1, from 80 to 338: score 618.7, E = 1.8e-204 *->YDeypHIGYDIdGKKImKparg.daLDdfLdsiddpdgWRgikDkkT YD++pH+GYD+dG++I+Kp r++d+LD+fLd++ddpd+WR+++D++T KIAA0124 80 YDDFPHVGYDLDGRRIYKPLRTrDELDQFLDKMDDPDYWRTVQDPMT 126 GqdVnLTDEeleLIkRiqkgeipdenidPYepiiewFtseteimPlsaaP G+d++LTDE+++L++R+q+g+++d ++PYep++++F+++++i+P++++P KIAA0124 127 GRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRP 176 epKRrFvPSkhEkKKVsKlVhAIrmGwikppekpkereeeekeepkfYDL ++KR+F+PS++Ek+KVs++VhAI+mGwi+p ++p++ + p+fYDL KIAA0124 177 ADKRSFIPSLVEKEKVSRMVHAIKMGWIQP-RRPRDPT------PSFYDL 219 WadddsnatdeerhlmhipAPKlpLPGHeeSYNPPpEYLpteeEkkeWlk Wa++d+na+ + rh+mh+pAPKl+LPGH+eSYNPPpEYL++eeE+ +W++ KIAA0124 220 WAQEDPNAVLG-RHKMHVPAPKLALPGHAESYNPPPEYLLSEEERLAWEQ 268 LlePeeRkrnFiPqKyksLRkVPaYsrfirERFeRCLDLYLcPRvRKnrL +eP eRk+ F+P+K++sLR+VPaY+rfi+ERFeRCLDLYLcPR+RK+r+ KIAA0124 269 -QEPGERKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRV 317 NIDpEsLiPKLPsPkDLqPFP<-* N+DpE+LiPKLP+P+DLqPFP KIAA0124 318 NVDPEDLIPKLPRPRDLQPFP 338 PF00400.22.fs: domain 1 of 7, from 339 to 377: score 45.0, E = 1e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ v++gH++ V+c+++sp g++l+sgS+Dg++++W+ KIAA0124 339 TCQAlVYrGHSDLVRCLSVSPG-GQWLVSGSDDGSLRLWE 377 PF00400.22.ls: domain 1 of 6, from 339 to 377: score 47.0, E = 5.8e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ v++gH++ V+c+++sp g++l+sgS+Dg++++W+ KIAA0124 339 TCQAlVYrGHSDLVRCLSVSPG-GQWLVSGSDDGSLRLWE 377 PF00400.22.fs: domain 4 of 7, from 506 to 542: score 12.8, E = 0.012 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + + + H + V vaf+p +p+l+ +S +++++++ KIAA0124 506 RSQSpFRhSH-GQVQRVAFHPA-RPFLLVASQ-RSVRLYH 542 PF00400.22.fs: domain 5 of 7, from 546 to 584: score 15.2, E = 0.0026 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e+++ l ++V+++a++p g +++gS D ++ +d KIAA0124 546 QELTkKLmPNCKWVSSLAVHPA-GDNVICGSYDSKLVWFD 584 PF00400.22.ls: domain 5 of 6, from 589 to 627: score 31.7, E = 2.4e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ + l++H+++ ++vaf+p +pl+asgS+Dg++ + + KIAA0124 589 TKPYrMLrHHKKALRAVAFHPR-YPLFASGSDDGSVIVCH 627 PF00400.22.fs: domain 6 of 7, from 589 to 627: score 29.7, E = 2.1e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ + l++H+++ ++vaf+p +pl+asgS+Dg++ + + KIAA0124 589 TKPYrMLrHHKKALRAVAFHPR-YPLFASGSDDGSVIVCH 627 PF00400.22.ls: domain 6 of 6, from 644 to 682: score 22.5, E = 0.0014 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +k++ +V +v f+p +p+++s+++Dgt++++ KIAA0124 644 KVLKgHVlTRDLGVLDVIFHPT-QPWVFSSGADGTVRLFT 682 PF00400.22.fs: domain 7 of 7, from 644 to 682: score 20.5, E = 8.1e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +k++ +V +v f+p +p+++s+++Dgt++++ KIAA0124 644 KVLKgHVlTRDLGVLDVIFHPT-QPWVFSSGADGTVRLFT 682 //