hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17565670/chunk_1/iprscan-20080501-17565670.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0121 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00711 58.0 1.2e-12 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00711 1/2 228 243 .. 1 16 [] 29.4 0.00048 SM00711 2/2 256 271 .. 1 16 [] 28.5 0.00091 Alignments of top-scoring domains: SM00711: domain 1 of 2, from 228 to 243: score 29.4, E = 0.00048 *->tssVdeHFrRALgenw<-* +++V+eHFrR+Lg+n+ KIAA0121 228 DPVVEEHFRRSLGKNY 243 SM00711: domain 2 of 2, from 256 to 271: score 28.5, E = 0.00091 *->tssVdeHFrRALgenw<-* t sVd+HF++ALg++w KIAA0121 256 TGSVDDHFAKALGDTW 271 //