hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17484802/chunk_1/iprscan-20080501-17484802.nocrc
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Query sequence: KIAA0116
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF01138.11.ls 3' exoribonuclease family, domain 1          164.3    2.9e-46   1
PF01138.11.fs 3' exoribonuclease family, domain 1          162.4      8e-46   1
PF03725.5.fs 3' exoribonuclease family, domain 2           58.5    1.4e-15   1
PF03725.5.ls 3' exoribonuclease family, domain 2           60.3    5.7e-15   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF01138.11.fs   1/1      30   165 ..     1   154 []   162.4    8e-46
PF01138.11.ls   1/1      30   165 ..     1   154 []   164.3  2.9e-46
PF03725.5.fs   1/1     195   261 ..     1    84 []    58.5  1.4e-15
PF03725.5.ls   1/1     195   261 ..     1    84 []    60.3  5.7e-15

Alignments of top-scoring domains:
PF01138.11.fs: domain 1 of 1, from 30 to 165: score 162.4, E = 8e-46
                   *->efRpieietGvlprQAAeGSalvelGddTkVlvtvtgeieppaqtda
                      ++R++e+et+v+++  ++GSa+v+lG +T +lv+v++e++ p     
    KIAA0116    30    DYRCVEVETDVVSN--TSGSARVKLG-HTDILVGVKAEMGTP----- 68   

                   QvllsldpplkglleveynaapfstgerkrREseGrptdrreveisrLid
                       +l+ p++g+le+ ++++ ++t+e++     Gr++d+  +ei++ ++
    KIAA0116    69 ----KLEKPNEGYLEFFVDCSASATPEFE-----GRGGDDLGTEIANTLY 109  

                   RalrpsrlidleklcI.egkpewqirvdvevlesdGstaprdaainAasl
                   R++   +++dl+ lcI++++++w+++vdv+ le++G++  +da+++A+ +
    KIAA0116   110 RIFNNKSSVDLKTLCIsPREHCWVLYVDVLLLECGGNL--FDAISIAVKA 157  

                   ALadAgiP<-*
                   AL++++iP   
    KIAA0116   158 ALFNTRIP    165  

PF01138.11.ls: domain 1 of 1, from 30 to 165: score 164.3, E = 2.9e-46
                   *->efRpieietGvlprQAAeGSalvelGddTkVlvtvtgeieppaqtda
                      ++R++e+et+v+++  ++GSa+v+lG +T +lv+v++e++ p     
    KIAA0116    30    DYRCVEVETDVVSN--TSGSARVKLG-HTDILVGVKAEMGTP----- 68   

                   QvllsldpplkglleveynaapfstgerkrREseGrptdrreveisrLid
                       +l+ p++g+le+ ++++ ++t+e++     Gr++d+  +ei++ ++
    KIAA0116    69 ----KLEKPNEGYLEFFVDCSASATPEFE-----GRGGDDLGTEIANTLY 109  

                   RalrpsrlidleklcI.egkpewqirvdvevlesdGstaprdaainAasl
                   R++   +++dl+ lcI++++++w+++vdv+ le++G++  +da+++A+ +
    KIAA0116   110 RIFNNKSSVDLKTLCIsPREHCWVLYVDVLLLECGGNL--FDAISIAVKA 157  

                   ALadAgiP<-*
                   AL++++iP   
    KIAA0116   158 ALFNTRIP    165  

PF03725.5.fs: domain 1 of 1, from 195 to 261: score 58.5, E = 1.4e-15
                   *->dpvaavtvGlvddqdeTeeeiilwlDptaeEdsllsdadlvVagted
                      ++++ vt ++++       ++++ +D+t++E++ +s a+l V++t++
    KIAA0116   195    NVPCIVTLCKIG-------YRHV-VDATLQEEA-CSLASLLVSVTSK 232  

                   GkskrksivalqmdalGkgnglteelleealelAkeg<-*
                   G      ++++ +  +G +++l++e ++e++e +k     
    KIAA0116   233 G-----VVTCMRK--VG-KGSLDPESIFEMMETGKRV    261  

PF03725.5.ls: domain 1 of 1, from 195 to 261: score 60.3, E = 5.7e-15
                   *->dpvaavtvGlvddqdeTeeeiilwlDptaeEdsllsdadlvVagted
                      ++++ vt ++++       ++++ +D+t++E++ +s a+l V++t++
    KIAA0116   195    NVPCIVTLCKIG-------YRHV-VDATLQEEA-CSLASLLVSVTSK 232  

                   GkskrksivalqmdalGkgnglteelleealelAkeg<-*
                   G      ++++ +  +G +++l++e ++e++e +k     
    KIAA0116   233 G-----VVTCMRK--VG-KGSLDPESIFEMMETGKRV    261  

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