hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17471204/chunk_1/iprscan-20080501-17471204.nocrc
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Query sequence: KIAA0115
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF03345.5.ls Dolichyl-diphosphooligosaccharide-protein   1061.9          0   1
PF03345.5.fs Dolichyl-diphosphooligosaccharide-protein   1059.9          0   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF03345.5.fs   1/1      26   455 ..     1   464 []  1059.9        0
PF03345.5.ls   1/1      26   455 ..     1   464 []  1061.9        0

Alignments of top-scoring domains:
PF03345.5.fs: domain 1 of 1, from 26 to 455: score 1059.9, E = 0
                   *->awlafcllLaligavltqaaRtLVLldnSlavretySvFLkSLkdRg
                      aw++f+llL+l+gav+++++RtLVLldn l+vret+S+F++SLkdRg
    KIAA0115    26    AWALFWLLLPLLGAVCASGPRTLVLLDN-LNVRETHSLFFRSLKDRG 71   

                   FkLtykdadDsSlkLfkYGKEerLYDNlIifspKgvkslGgqisvksLsk
                   F+Lt+k+adD+Sl+L+kYG  e+LYDNlIifsp +v+++Gg+i+v+++s+
    KIAA0115    72 FELTFKTADDPSLSLIKYG--EFLYDNLIIFSP-SVEDFGGNINVETISA 118  

                   FvdsGGNvLVaASPsaigdalRElgsElGieldEegtvViDHfnydesLD
                   F+d+GG+vLVaAS s+igd+lRElgsE+Gie+dEe+t+ViDH+nyd+s D
    KIAA0115   119 FIDGGGSVLVAAS-SDIGDPLRELGSECGIEFDEEKTAVIDHHNYDIS-D 166  

                   sGdhTtilvvsdnlleapyIvgkskraaDaePiLFkGiGlvagknNplvl
                   +G+hT+i+++++nll+ap+Ivgks+    ++PiLF+G+G+va+++Nplvl
    KIAA0115   167 LGQHTLIVADTENLLKAPTIVGKSS----LNPILFRGVGMVADPDNPLVL 212  

                   pILrAssTSYsYnpKTeAevskNPwaaGsqtlLVagLQsrNNARvvfsGS
                   +IL++ssTSYs++p  +++++++P+a+G++tlL+agLQ+rNNARv+fsGS
    KIAA0115   213 DILTGSSTSYSFFP--DKPITQYPHAVGKNTLLIAGLQARNNARVIFSGS 260  

                   ldflsdeffsqavqsaspSvqr.aqsGNqefAkaLtkWVFkEkGVLrvtn
                   ldf+sd+ff++avq+a+p++qr +q+GN+e+A+aL++WVFkE+GVLrv++
    KIAA0115   261 LDFFSDSFFNSAVQKAAPGSQRySQTGNYELAVALSRWVFKEEGVLRVGP 310  

                   vtHhkvgEtlppeeASpYtItDeViYSIgIseLenGeWvPfvAdDiQLEl
                   v+Hh+vgEt+pp++   Yt+tD+V+YSI+I++L+nG+WvPf++dDiQLE+
    KIAA0115   311 VSHHRVGETAPPNA---YTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEF 357  

                   vriDPfvRttLkpsgsDSeTsgkysaeFklPDvyGVFtFkvDYrRvGyTh
                   vriDPfvRt+Lk++g      gkys++FklPDvyGVF+FkvDY+R+GyTh
    KIAA0115   358 VRIDPFVRTFLKKKG------GKYSVQFKLPDVYGVFQFKVDYNRLGYTH 401  

                   lydktqvsvRpLaHtqYeRSWFIpsAYPYYASaFsvmvglllFsivFLht
                   ly++tqvsvRpL+HtqYeR  FIpsAYPYYASaF++m+gl++FsivFLh+
    KIAA0115   402 LYSSTQVSVRPLQHTQYER--FIPSAYPYYASAFPMMLGLFIFSIVFLHM 449  

                   KdapvKGAkvleseKKkN<-*
                   K+++ K           +   
    KIAA0115   450 KEKE-K-----------S    455  

PF03345.5.ls: domain 1 of 1, from 26 to 455: score 1061.9, E = 0
                   *->awlafcllLaligavltqaaRtLVLldnSlavretySvFLkSLkdRg
                      aw++f+llL+l+gav+++++RtLVLldn l+vret+S+F++SLkdRg
    KIAA0115    26    AWALFWLLLPLLGAVCASGPRTLVLLDN-LNVRETHSLFFRSLKDRG 71   

                   FkLtykdadDsSlkLfkYGKEerLYDNlIifspKgvkslGgqisvksLsk
                   F+Lt+k+adD+Sl+L+kYG  e+LYDNlIifsp +v+++Gg+i+v+++s+
    KIAA0115    72 FELTFKTADDPSLSLIKYG--EFLYDNLIIFSP-SVEDFGGNINVETISA 118  

                   FvdsGGNvLVaASPsaigdalRElgsElGieldEegtvViDHfnydesLD
                   F+d+GG+vLVaAS s+igd+lRElgsE+Gie+dEe+t+ViDH+nyd+s D
    KIAA0115   119 FIDGGGSVLVAAS-SDIGDPLRELGSECGIEFDEEKTAVIDHHNYDIS-D 166  

                   sGdhTtilvvsdnlleapyIvgkskraaDaePiLFkGiGlvagknNplvl
                   +G+hT+i+++++nll+ap+Ivgks+    ++PiLF+G+G+va+++Nplvl
    KIAA0115   167 LGQHTLIVADTENLLKAPTIVGKSS----LNPILFRGVGMVADPDNPLVL 212  

                   pILrAssTSYsYnpKTeAevskNPwaaGsqtlLVagLQsrNNARvvfsGS
                   +IL++ssTSYs++p  +++++++P+a+G++tlL+agLQ+rNNARv+fsGS
    KIAA0115   213 DILTGSSTSYSFFP--DKPITQYPHAVGKNTLLIAGLQARNNARVIFSGS 260  

                   ldflsdeffsqavqsaspSvqr.aqsGNqefAkaLtkWVFkEkGVLrvtn
                   ldf+sd+ff++avq+a+p++qr +q+GN+e+A+aL++WVFkE+GVLrv++
    KIAA0115   261 LDFFSDSFFNSAVQKAAPGSQRySQTGNYELAVALSRWVFKEEGVLRVGP 310  

                   vtHhkvgEtlppeeASpYtItDeViYSIgIseLenGeWvPfvAdDiQLEl
                   v+Hh+vgEt+pp++   Yt+tD+V+YSI+I++L+nG+WvPf++dDiQLE+
    KIAA0115   311 VSHHRVGETAPPNA---YTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEF 357  

                   vriDPfvRttLkpsgsDSeTsgkysaeFklPDvyGVFtFkvDYrRvGyTh
                   vriDPfvRt+Lk++g      gkys++FklPDvyGVF+FkvDY+R+GyTh
    KIAA0115   358 VRIDPFVRTFLKKKG------GKYSVQFKLPDVYGVFQFKVDYNRLGYTH 401  

                   lydktqvsvRpLaHtqYeRSWFIpsAYPYYASaFsvmvglllFsivFLht
                   ly++tqvsvRpL+HtqYeR  FIpsAYPYYASaF++m+gl++FsivFLh+
    KIAA0115   402 LYSSTQVSVRPLQHTQYER--FIPSAYPYYASAFPMMLGLFIFSIVFLHM 449  

                   KdapvKGAkvleseKKkN<-*
                   K+++ K           +   
    KIAA0115   450 KEKE-K-----------S    455  

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