# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00659.fasta.huge -Q ../query/KIAA0111.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0111, 412 aa vs ./tmplib.23147 library 1987093 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.8978+/-0.00451; mu= 10.2869+/- 0.306 mean_var=69.8529+/-16.243, 0's: 0 Z-trim: 3 B-trim: 9 in 1/39 Lambda= 0.153455 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0801 ( 1058 res) hg03949(revised) (1058) 744 174.5 2.7e-44 KIAA1595 ( 471 res) fj09517 ( 471) 369 91.1 1.4e-19 KIAA0928 ( 1922 res) hh16052 (1922) 147 42.5 0.00026 >>KIAA0801 ( 1058 res) hg03949(revised) (1058 aa) initn: 580 init1: 476 opt: 744 Z-score: 887.1 bits: 174.5 E(): 2.7e-44 Smith-Waterman score: 744; 33.422% identity (67.109% similar) in 377 aa overlap (45-411:404-778) 20 30 40 50 60 70 KIAA01 RKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII :. .: .. .:.:::. :: .:: :. KIAA08 EEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIM 380 390 400 410 420 430 80 90 100 110 120 KIAA01 KGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQ---ALILAPTRELAVQIQKGLLA .:::.:. ...:.::: .: . ... . : ..: . :.:..::::::.:: : KIAA08 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKK 440 450 460 470 480 490 130 140 150 160 170 180 KIAA01 LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT---RAIKML .. .... .:. :::...:.: .: : .... ::::..::. : :. : . .. KIAA08 FSKTLGLRV-VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYV 500 510 520 530 540 550 190 200 210 220 230 240 KIAA01 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD ::::::.:.. ::. :.. . . : :.:..:::.:. . .. .... ::.. : KIAA08 VLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGR 560 570 580 590 600 610 250 260 270 280 290 300 KIAA01 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI-FCNTKRKVDWLTEKMREANFT .. ..: ...: :: :: : .: . .:: : . ....: : . . .:.. KIAA08 SVVCSDVEQQVIVIE-EEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYP 620 630 640 650 660 670 310 320 330 340 350 360 KIAA01 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH :.:: . : .:.::...:..:. ..:..:.: :::::: .. :..::. ::. : :.: KIAA08 CMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVH 680 690 700 710 720 730 370 380 390 400 410 KIAA01 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI : ::.:: : :: : .:. .:. : :: . . .: .. : KIAA08 RAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGK 740 750 760 770 780 790 KIAA08 IIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKK 800 810 820 830 840 850 >>KIAA1595 ( 471 res) fj09517 (471 aa) initn: 396 init1: 210 opt: 369 Z-score: 443.1 bits: 91.1 E(): 1.4e-19 Smith-Waterman score: 412; 29.259% identity (61.481% similar) in 270 aa overlap (159-412:7-275) 130 140 150 160 170 180 KIAA01 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS----LRT--RAI .....::::. ::.::.. : . :.. KIAA15 LSFQSGNIIVATPGRLEDMFRRKAEGLDLASCVRSL 10 20 30 190 200 210 220 230 240 KIAA01 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV .:::::::..:. ::. .: . ..:: .. :.::: .:. ... . .:.:. : KIAA15 DVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSV 40 50 60 70 80 90 250 260 270 280 290 KIAA01 KRDELTLEGIKQF------FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE :. .. . .. . : . . ::. : . . . ..: .: :.. . KIAA15 KEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGK 100 110 120 130 140 150 300 310 320 330 340 350 KIAA01 KMRE--ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD .. . . .:: : : :..:. :::. : .:. ::: :::.:.:.:. ...:: KIAA15 ALEVLVKGVKIMCIHGKMKYK-RNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYD 160 170 180 190 200 210 360 370 380 390 400 410 KIAA01 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM-PM-NVADLI :.: ..:: ::..: :. : :. :. . . . . ..:: :. :.:::. KIAA15 PPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLL 220 230 240 250 260 270 KIAA15 PKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMP 280 290 300 310 320 330 >>KIAA0928 ( 1922 res) hh16052 (1922 aa) initn: 157 init1: 124 opt: 147 Z-score: 169.3 bits: 42.5 E(): 0.00026 Smith-Waterman score: 147; 24.706% identity (68.235% similar) in 85 aa overlap (315-399:499-578) 290 300 310 320 330 340 KIAA01 CNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV ...: ....::. . .::.:.. .:.:. KIAA09 PELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDI 470 480 490 500 510 520 350 360 370 380 390 400 KIAA01 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM :. .:.. .:::.. . :.. ::. : .. :.. : ....:. .: KIAA09 PKCNLVVRFDLPTEYRSYVQSKGRA----RAPIS-NYIMLADTDKIKSFEEDLKTYKAIE 530 540 550 560 570 580 410 KIAA01 PMNVADLI KIAA09 KILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPS 590 600 610 620 630 640 412 residues in 1 query sequences 1987093 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:06 2008 done: Thu Dec 18 15:08:07 2008 Total Scan time: 0.390 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]