hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17390511/chunk_1/iprscan-20080501-17390511.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0110 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06581.3.fs Protein of unknown function (DUF1135) 703.9 4.4e-216 1 PF06581.3.ls Protein of unknown function (DUF1135) 705.9 2.7e-209 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06581.3.fs 1/1 10 275 .] 1 267 [] 703.9 4.4e-216 PF06581.3.ls 1/1 10 275 .] 1 267 [] 705.9 2.7e-209 Alignments of top-scoring domains: PF06581.3.fs: domain 1 of 1, from 10 to 275: score 703.9, E = 4.4e-216 *->LslaaapdLewyeKpEethAleveleevippaqepsnlaEpFCPrdc Ls+aa+pdLewyeK+EethA+++el+e+ +++qep+n++E+FCPrdc KIAA0110 10 LSSAAVPDLEWYEKSEETHASQIELLET-SSTQEPLNASEAFCPRDC 55 lvPvvFPGpvsqedCCqFtceLLKhilyqRlqlpLPYeqLkHFYRKpvPq +vPvvFPGpvsqe+CCqFtceLLKhi+yqR+qlpLPYeqLkHFYRKp+Pq KIAA0110 56 MVPVVFPGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKPSPQ 105 aedtakKKawlatEarnRKCqqaLAeLEsvLsHLedFFARtLvpkvLill ae+++kKK++++tE+++RKCqqaLAeLEsvLsHLedFFARtLvp+vLill KIAA0110 106 AEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFARTLVPRVLILL 155 gGnALspKeFyELDLsrLapfgvDqgLntaaCLRRLFRAiFlADpFsELq gGnALspKeFyELDLs+Lap++vDq+L+taaCLRRLFRAiF+AD+FsELq KIAA0110 156 GGNALSPKEFYELDLSLLAPYSVDQSLSTAACLRRLFRAIFMADAFSELQ 205 tPPLmGtivmvqGHRdCGEDWFqPKLnYRvPsRGHKLtvtLsCGRPsvpa +PPLmGt+vm+qGHR+CGEDWF+PKLnYRvPsRGHKLtvtLsCGRPs+++ KIAA0110 206 APPLMGTVVMAQGHRNCGEDWFRPKLNYRVPSRGHKLTVTLSCGRPSIRT 255 mAsEDYiWFqAPvtlKGFhE<-* +A+EDYiWFqAPvt+KGF+E KIAA0110 256 TAWEDYIWFQAPVTFKGFRE 275 PF06581.3.ls: domain 1 of 1, from 10 to 275: score 705.9, E = 2.7e-209 *->LslaaapdLewyeKpEethAleveleevippaqepsnlaEpFCPrdc Ls+aa+pdLewyeK+EethA+++el+e+ +++qep+n++E+FCPrdc KIAA0110 10 LSSAAVPDLEWYEKSEETHASQIELLET-SSTQEPLNASEAFCPRDC 55 lvPvvFPGpvsqedCCqFtceLLKhilyqRlqlpLPYeqLkHFYRKpvPq +vPvvFPGpvsqe+CCqFtceLLKhi+yqR+qlpLPYeqLkHFYRKp+Pq KIAA0110 56 MVPVVFPGPVSQEGCCQFTCELLKHIMYQRQQLPLPYEQLKHFYRKPSPQ 105 aedtakKKawlatEarnRKCqqaLAeLEsvLsHLedFFARtLvpkvLill ae+++kKK++++tE+++RKCqqaLAeLEsvLsHLedFFARtLvp+vLill KIAA0110 106 AEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFARTLVPRVLILL 155 gGnALspKeFyELDLsrLapfgvDqgLntaaCLRRLFRAiFlADpFsELq gGnALspKeFyELDLs+Lap++vDq+L+taaCLRRLFRAiF+AD+FsELq KIAA0110 156 GGNALSPKEFYELDLSLLAPYSVDQSLSTAACLRRLFRAIFMADAFSELQ 205 tPPLmGtivmvqGHRdCGEDWFqPKLnYRvPsRGHKLtvtLsCGRPsvpa +PPLmGt+vm+qGHR+CGEDWF+PKLnYRvPsRGHKLtvtLsCGRPs+++ KIAA0110 206 APPLMGTVVMAQGHRNCGEDWFRPKLNYRVPSRGHKLTVTLSCGRPSIRT 255 mAsEDYiWFqAPvtlKGFhE<-* +A+EDYiWFqAPvt+KGF+E KIAA0110 256 TAWEDYIWFQAPVTFKGFRE 275 //