# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bm00714.fasta.huge -Q ../query/KIAA0098.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0098, 553 aa vs ./tmplib.23147 library 1986952 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.3136+/-0.00469; mu= 9.9374+/- 0.321 mean_var=82.1602+/-19.588, 0's: 0 Z-trim: 2 B-trim: 89 in 1/39 Lambda= 0.141496 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0002 ( 555 res) ha00029 ( 555) 825 178.6 1.1e-45 >>KIAA0002 ( 555 res) ha00029 (555 aa) initn: 735 init1: 332 opt: 825 Z-score: 912.2 bits: 178.6 E(): 1.1e-45 Smith-Waterman score: 825; 31.631% identity (66.601% similar) in 509 aa overlap (42-545:31-531) 20 30 40 50 60 70 KIAA00 TMASMGTLAFDEYGRPFLIIKDQDRKSRLMGLE-ALKSHIMAAKAVANTMRTSLGPNGLD ::: :. .:.: : .:.: ::. ::.:.. KIAA00 TASCRLAMALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPKGMN 10 20 30 40 50 60 80 90 100 110 120 130 KIAA00 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE ::.... . ::::.:::: ..:.: ::..: :. :..:.::::. :.:.:::::: KIAA00 KMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLE 70 80 90 100 110 120 140 150 160 170 180 190 KIAA00 EAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVV ::.:: :. .. .::: : : : : : .. ...: . . . .:.. :: KIAA00 LAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQY 130 140 150 160 170 180 200 210 220 230 240 KIAA00 NSCHRQMAEIAVNAVLTV-ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP .. . .:.. ..: ... : . .:: :.: .:. . ......:.. :. .. KIAA00 GN-EVFLAKLIAQACVSIFPDSGHFNVDN--IRVCKILGSGISSSSVLHGMVFKKE-TEG 190 200 210 220 230 250 260 270 280 290 300 KIAA00 QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGA .. . :.:::::. .:::. .:: . . ..:. ..: :.. .. ... : .::: KIAA00 DVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGA 240 250 260 270 280 290 310 320 330 340 350 360 KIAA00 NLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAG :... : : : . :. :: . ... . ..:. .::.. . :..: KIAA00 NVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCD 300 310 320 330 340 350 370 380 390 400 410 420 KIAA00 LVQEISFGTTKDKMLVIEQCKNSRAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDN : : : ...:... :.. :. :: .::.. .... .: . :.. ... : ::. KIAA00 SVYLSEVGDT--QVVVFKHEKEDGAISTIVLRGSTDNLMDDIERVVDDGVNTFKVLTRDK 360 370 380 390 400 410 430 440 450 460 470 480 KIAA00 RVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTE :.: ::::.:: : ... .. :: :::::.. ::.:.:.:: ::.::::.. ..... KIAA00 RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISK 420 430 440 450 460 470 490 500 510 520 530 540 KIAA00 VRARQVKEMNPALGIDCLHK--GTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIR . : . .: : .:.: . ...:: . ...: .:: :.:::. . .:..:.: KIAA00 LYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 480 490 500 510 520 530 550 KIAA00 KPGESEE KIAA00 MAKPAGGPKPPSGKKDWDDDQND 540 550 553 residues in 1 query sequences 1986952 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:42 2008 done: Thu Dec 18 15:07:42 2008 Total Scan time: 0.480 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]