# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bm00714.fasta.huge -Q ../query/KIAA0098.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0098, 553 aa
 vs ./tmplib.23147 library

1986952 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.3136+/-0.00469; mu= 9.9374+/- 0.321
 mean_var=82.1602+/-19.588, 0's: 0 Z-trim: 2  B-trim: 89 in 1/39
 Lambda= 0.141496

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0002  ( 555 res)   ha00029                     ( 555)  825 178.6 1.1e-45


>>KIAA0002  ( 555 res)   ha00029                          (555 aa)
 initn: 735 init1: 332 opt: 825  Z-score: 912.2  bits: 178.6 E(): 1.1e-45
Smith-Waterman score: 825;  31.631% identity (66.601% similar) in 509 aa overlap (42-545:31-531)

              20        30        40         50        60        70
KIAA00 TMASMGTLAFDEYGRPFLIIKDQDRKSRLMGLE-ALKSHIMAAKAVANTMRTSLGPNGLD
                                     ::: :.  .:.: : .:.: ::. ::.:..
KIAA00 TASCRLAMALHVPKAPGFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPKGMN
               10        20        30        40        50        60

               80        90       100       110       120       130
KIAA00 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE
       ::....   . ::::.::::  ..:.:  ::..:  :. :..:.::::. :.:.::::::
KIAA00 KMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLE
               70        80        90       100       110       120

              140       150       160       170       180       190
KIAA00 EAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVV
        ::.::  :.   .. .::: : : : : : ..      ...: . . .  .:.. ::  
KIAA00 LAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNLRDIDEVSSLLRTSIMSKQY
              130       140       150       160       170       180

              200        210       220       230       240         
KIAA00 NSCHRQMAEIAVNAVLTV-ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP
       .. .  .:.. ..: ...  :  . .::   :.:   .:. . ......:..  :. .. 
KIAA00 GN-EVFLAKLIAQACVSIFPDSGHFNVDN--IRVCKILGSGISSSSVLHGMVFKKE-TEG
               190       200         210       220       230       

     250       260       270       280       290       300         
KIAA00 QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGA
       .. . :.:::::. .:::.    .::  . . ..:.   ..: :.. .. ... : .:::
KIAA00 DVTS-VKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQVKAIADTGA
        240        250       260       270       280       290     

     310       320       330       340       350       360         
KIAA00 NLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAG
       :...      : : :   . :.  ::  .  ... .  ..:.  .::..  . :..:   
KIAA00 NVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCD
         300       310       320       330       340       350     

     370       380       390        400       410       420        
KIAA00 LVQEISFGTTKDKMLVIEQCKNSRAV-TIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDN
        :     : :  ...:... :.. :. :: .::..  .... .: . :.. ... : ::.
KIAA00 SVYLSEVGDT--QVVVFKHEKEDGAISTIVLRGSTDNLMDDIERVVDDGVNTFKVLTRDK
         360         370       380       390       400       410   

      430       440       450       460       470       480        
KIAA00 RVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTE
       :.: ::::.::  :  ... .. :: :::::.. ::.:.:.:: ::.::::..  .....
KIAA00 RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISK
           420       430       440       450       460       470   

      490       500         510       520       530       540      
KIAA00 VRARQVKEMNPALGIDCLHK--GTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIR
       . : . .: :  .:.:   .  ...:: .  ...: .::   :.:::. .  .:..:.: 
KIAA00 LYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII
            480       490       500       510       520       530  

        550                   
KIAA00 KPGESEE                
                              
KIAA00 MAKPAGGPKPPSGKKDWDDDQND
            540       550     




553 residues in 1 query   sequences
1986952 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:42 2008 done: Thu Dec 18 15:07:42 2008
 Total Scan time:  0.480 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]