hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17104096/chunk_1/iprscan-20080501-17104096.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0093 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 628.1 6.9e-186 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 626.2 2.6e-185 1 PF00397.16.ls WW domain 235.9 7.9e-68 4 PF00397.16.fs WW domain 227.9 2.1e-65 4 PF00168.20.fs C2 domain 106.9 3e-31 1 PF00168.20.ls C2 domain 108.9 1.4e-29 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/1 48 134 .. 1 88 [] 106.9 3e-31 PF00168.20.ls 1/1 48 134 .. 1 88 [] 108.9 1.4e-29 PF00397.16.fs 1/4 220 249 .. 1 30 [] 57.5 4e-15 PF00397.16.ls 1/4 220 249 .. 1 30 [] 59.5 1e-14 PF00397.16.ls 2/4 377 406 .. 1 30 [] 56.9 6.3e-14 PF00397.16.fs 2/4 377 406 .. 1 30 [] 54.9 2.2e-14 PF00397.16.fs 3/4 450 479 .. 1 30 [] 57.2 4.9e-15 PF00397.16.ls 3/4 450 479 .. 1 30 [] 59.2 1.3e-14 PF00397.16.fs 4/4 502 531 .. 1 30 [] 58.4 2.2e-15 PF00397.16.ls 4/4 502 531 .. 1 30 [] 60.4 5.4e-15 PF00632.15.fs 1/1 621 926 .. 1 351 [] 626.2 2.6e-185 PF00632.15.ls 1/1 621 926 .. 1 351 [] 628.1 6.9e-186 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 1, from 48 to 134: score 106.9, E = 3e-31 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk......kkTk +rV+vi + +L++kD + g sDPYV+v+l + +++ ++ +Tk KIAA0093 48 VRVRVIAGIGLAKKD-ILGASDPYVRVTLYD----PMngvltsVQTK 89 vikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +ikk+lNP+WNE+ F ++p+ ++ L +eV+D++r++rddflG+v KIAA0093 90 TIKKSLNPKWNEEILFR-VHPQQHR-LLFEVFDENRLTRDDFLGQVD 134 PF00168.20.ls: domain 1 of 1, from 48 to 134: score 108.9, E = 1.4e-29 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk......kkTk +rV+vi + +L++kD + g sDPYV+v+l + +++ ++ +Tk KIAA0093 48 VRVRVIAGIGLAKKD-ILGASDPYVRVTLYD----PMngvltsVQTK 89 vikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +ikk+lNP+WNE+ F ++p+ ++ L +eV+D++r++rddflG+v KIAA0093 90 TIKKSLNPKWNEEILFR-VHPQQHR-LLFEVFDENRLTRDDFLGQVD 134 PF00397.16.fs: domain 1 of 4, from 220 to 249: score 57.5, E = 4e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeer d Gr+YY+Nh++++TqW +P KIAA0093 220 LPPGWEERQDILGRTYYVNHESRRTQWKRP 249 PF00397.16.ls: domain 1 of 4, from 220 to 249: score 59.5, E = 1e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeer d Gr+YY+Nh++++TqW +P KIAA0093 220 LPPGWEERQDILGRTYYVNHESRRTQWKRP 249 PF00397.16.ls: domain 2 of 4, from 377 to 406: score 56.9, E = 6.3e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWee d+ Gr YY++hn++tT+W+kP KIAA0093 377 LPPGWEEKQDERGRSYYVDHNSRTTTWTKP 406 PF00397.16.fs: domain 2 of 4, from 377 to 406: score 54.9, E = 2.2e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWee d+ Gr YY++hn++tT+W+kP KIAA0093 377 LPPGWEEKQDERGRSYYVDHNSRTTTWTKP 406 PF00397.16.fs: domain 3 of 4, from 450 to 479: score 57.2, E = 4.9e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe+r p+Grp++++hnTktT+We+P KIAA0093 450 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 479 PF00397.16.ls: domain 3 of 4, from 450 to 479: score 59.2, E = 1.3e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe+r p+Grp++++hnTktT+We+P KIAA0093 450 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 479 PF00397.16.fs: domain 4 of 4, from 502 to 531: score 58.4, E = 2.2e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeert+ dGr++Y+Nhn k+TqWe+P KIAA0093 502 LPPGWEERTHTDGRIFYINHNIKRTQWEDP 531 PF00397.16.ls: domain 4 of 4, from 502 to 531: score 60.4, E = 5.4e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeert+ dGr++Y+Nhn k+TqWe+P KIAA0093 502 LPPGWEERTHTDGRIFYINHNIKRTQWEDP 531 PF00632.15.fs: domain 1 of 1, from 621 to 926: score 626.2, E = 2.6e-185 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L+s+e+fnP+ygLFeys a+d+ytlqinP+s+ +n++ KIAA0093 621 FLISKEMFNPYYGLFEYS----------ATDNYTLQINPNSGLCNED 657 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yFkFiGr+ G+A+y+g+lld +F r+FYK++L kp+tl+D+esvD KIAA0093 658 HLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMML--HKPITLHDMESVD 705 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas +e+ynSL+w+lend++ +L+L F ++ee f KIAA0093 706 SEYYNSLRWILENDPT-------------ELDLRFIIDEEL---F----- 734 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+t ++e Lk +G++I VTn+NkkeY+ L++++r+ ++i+kQ+ AF++ KIAA0093 735 --GQTHQHE-LKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKE 781 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF e+ip++l+++Fd++ELelL+cG+++ +Dv+d++++T+Yk+gY+++++ KIAA0093 782 GFFELIPQDLIKIFDENELELLMCGLGD-VDVNDWREHTKYKNGYSANHQ 830 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFW++v +++e+r +LLqFvTG+sRvP++GF++L+ GsnGp++ KIAA0093 831 --VIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELY--GSNGPQS 876 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG Ft+e + g+++ LP+AHTCFNrLdLPpY+S E+L kL +AI e+t+G KIAA0093 877 FTVEQW---GTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAI-ENTQG 922 Fgle<-* F+ + KIAA0093 923 FDGV 926 PF00632.15.ls: domain 1 of 1, from 621 to 926: score 628.1, E = 6.9e-186 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L+s+e+fnP+ygLFeys a+d+ytlqinP+s+ +n++ KIAA0093 621 FLISKEMFNPYYGLFEYS----------ATDNYTLQINPNSGLCNED 657 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yFkFiGr+ G+A+y+g+lld +F r+FYK++L kp+tl+D+esvD KIAA0093 658 HLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMML--HKPITLHDMESVD 705 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas +e+ynSL+w+lend++ +L+L F ++ee f KIAA0093 706 SEYYNSLRWILENDPT-------------ELDLRFIIDEEL---F----- 734 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+t ++e Lk +G++I VTn+NkkeY+ L++++r+ ++i+kQ+ AF++ KIAA0093 735 --GQTHQHE-LKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKE 781 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF e+ip++l+++Fd++ELelL+cG+++ +Dv+d++++T+Yk+gY+++++ KIAA0093 782 GFFELIPQDLIKIFDENELELLMCGLGD-VDVNDWREHTKYKNGYSANHQ 830 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFW++v +++e+r +LLqFvTG+sRvP++GF++L+ GsnGp++ KIAA0093 831 --VIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELY--GSNGPQS 876 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG Ft+e + g+++ LP+AHTCFNrLdLPpY+S E+L kL +AI e+t+G KIAA0093 877 FTVEQW---GTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAI-ENTQG 922 Fgle<-* F+ + KIAA0093 923 FDGV 926 //