# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01225.fasta.huge -Q ../query/KIAA0088.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0088, 943 aa
 vs ./tmplib.23147 library

1986562 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.2496+/-0.00541; mu= 20.8961+/- 0.370
 mean_var=100.4427+/-23.608, 0's: 0 Z-trim: 1  B-trim: 16 in 1/39
 Lambda= 0.127972

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1161  ( 680 res)   hj01210s1                   ( 680)  258 58.8 2.6e-09


>>KIAA1161  ( 680 res)   hj01210s1                        (680 aa)
 initn: 248 init1: 167 opt: 258  Z-score: 258.9  bits: 58.8 E(): 2.6e-09
Smith-Waterman score: 326;  25.962% identity (48.317% similar) in 416 aa overlap (404-801:295-668)

           380       390       400       410       420       430   
KIAA00 VFRQYASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHNLPCDVIWLDIEHAD
                                     :.  ::.  : .  :..  . . .:  .. 
KIAA11 RYFNKPSRVPAPEAFRDPIWSTWALYGRAVDQDKVLRFAQQIRLHHFNSSHLEIDDMYTP
          270       280       290       300       310       320    

           440       450       460       470       480       490   
KIAA00 GKRYFTWDPSRFPQPRTMLERLASKRRKLVAIVDPHIKVDSGYRVHEELRNLGLYVKTRD
       .   : .:  .::.   :..:: .   ...  : : .. .:. :  : ..   :.:.   
KIAA11 AYGDFDFDEVKFPNASDMFRRLRDAGFRVTLWVHPFVNYNSS-RFGEGVERE-LFVREPT
          330       340       350       360        370        380  

             500       510       520       530       540       550 
KIAA00 GS--DYEGWCWPGSAGYPDFTNPTMRAWWANMFSYDNYEGSAPNLFVWNDMNEPSVFNGP
       :       : : : ..  :::.:  : :. . .     . :. ..           :.. 
KIAA11 GRLPALVRW-WNGIGAVLDFTHPKARDWFQGHLRRLRSRYSVASF----------KFDAG
            390        400       410       420                 430 

             560       570       580       590       600           
KIAA00 EVTMLKDAQHYGGWEHRDVHNIYGLYVHMATADGLRQRSGGMERPFVLARAFFAG--SQR
       ::..:           ::    .. :  .   .   .:   :  ::       .:  :: 
KIAA11 EVSYLP----------RD----FSTYRPLPDPSVWSRRYTEMALPFFSLAEVRVGYQSQN
                           440       450       460       470       

     610        620          630       640        650              
KIAA00 FGAVWTG-DNTAEWDH---LKISIPMCLSLGLVGLSFCGAD-VGGFF--------KNPEP
       ..  .   :  . : .   :.  ::  :.....:  :   : :::            :: 
KIAA11 ISCFFRLVDRDSVWGYDLGLRSLIPAVLTVSMLGYPFILPDMVGGNAVPQRTAGGDVPER
       480       490       500       510       520       530       

        660       670       680       690       700        710     
KIAA00 ELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDALGQRYSLL-PFWYTLLY
       :: .:: ...:..: ..           ::   ..   : .   . : ::. :.   :  
KIAA11 ELYIRWLEVAAFMPAMQFSI-------PPWRYDAEVVAIAQKFAALRASLVAPLLLELAG
       540       550              560       570       580       590

         720       730       740       750       760       770     
KIAA00 QAHREGIPVMRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLPGQGEVW
       ..   : :..::::   : : :.  ::.:.:.::.::: :: . : .  .::::. :. :
KIAA11 EVTDTGDPIVRPLWWIAPGDETAHRIDSQFLIGDTLLVAPVLEPGKQERDVYLPA-GK-W
              600       610       620       630       640          

         780       790       800       810       820       830     
KIAA00 YDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPRWMRVRRSSECMKDDPITLFVALSP
          .::. .   .:   :: :.. ::                                  
KIAA11 ---RSYKGELFDKT---PVLLTDYPVDLDEIAYFTWAS                      
         650          660       670       680                      




943 residues in 1 query   sequences
1986562 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:20 2008 done: Thu Dec 18 15:07:21 2008
 Total Scan time:  0.640 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]