hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16573703/chunk_1/iprscan-20080501-16573703.nocrc
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Query sequence: KIAA0085
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00799 mtp: Golgi 4-transmembrane spanning transpor   679.6   7.9e-202   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00799   1/1      11   269 .]     1   263 []   679.6 7.9e-202

Alignments of top-scoring domains:
TIGR00799: domain 1 of 1, from 11 to 269: score 679.6, E = 7.9e-202
                   *->RsdrvrqTRCCGCfnvRvaTiaLaiyyvvvsvLlfIeltVEVahGkn
                      R+++vrqT CC CfnvR+aT+aLaiy+v++svLlfIe++VEVahGk+
    KIAA0085    11    RLSTVRQT-CC-CFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKA 55   

                   ScklvniqYlriadllSSefllinalvlisvSlLmgvvknREkyllpflS
                   Sckl++++Ylriadl+SS flli++l++is+SlL+gvvknREkyllpflS
    KIAA0085    56 SCKLSQMGYLRIADLISS-FLLITMLFIISLSLLIGVVKNREKYLLPFLS 104  

                   lQimDyLLCLLTLLGSYiELPAYLKLA.RsRassskiPlmtlqLlDFvLS
                   lQimDyLLCLLTLLGSYiELPAYLKLA+RsRasssk+PlmtlqLlDF+LS
    KIAA0085   105 LQIMDYLLCLLTLLGSYIELPAYLKLAsRSRASSSKFPLMTLQLLDFCLS 154  

                   iLvliSSymevPTYlnfkslnhlnylPskedllhlqfiklllIvsvaFit
                   iL+l+SSymevPTYlnfks+nh+nylPs+ed++h+qfik+++I+s+aFit
    KIAA0085   155 ILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIKMMIIFSIAFIT 204  

                   vlIfKvYlfkCVwnCYkyiknmNsPeiaekpaskmlpkvvLPsYEeAlsl
                   vlIfKvY+fkCVw+CY++ik+mNs  ++ek++skml+kvvLPsYEeAlsl
    KIAA0085   205 VLIFKVYMFKCVWRCYRLIKCMNS--VEEKRNSKMLQKVVLPSYEEALSL 252  

                   PeKtPEGdPAPPPYsev<-*
                   P+KtPEG+PAPPPYsev   
    KIAA0085   253 PSKTPEGGPAPPPYSEV    269  

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