hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16573703/chunk_1/iprscan-20080501-16573703.nocrc
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Query sequence: KIAA0085
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03821.6.ls Golgi 4-transmembrane spanning transporter     582.2   4.5e-172   1
PF03821.6.fs Golgi 4-transmembrane spanning transporter     580.3   1.7e-171   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03821.6.fs   1/1      36   268 ..     1   235 []   580.3 1.7e-171
PF03821.6.ls   1/1      36   268 ..     1   235 []   582.2 4.5e-172

Alignments of top-scoring domains:
PF03821.6.fs: domain 1 of 1, from 36 to 268: score 580.3, E = 1.7e-171
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                      ++msvLL+I++sVEvAh+k+sCkls+mgYLRiADL+SSFLLIt+lf+
    KIAA0085    36    VIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISSFLLITMLFI 82   

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   islS+LiGvvKNREKYll+Fls+q+m++ll+l++Llg++ielpaY++las
    KIAA0085    83 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLAS 132  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                   Rsr++++k+P++++qL+DFcLsiL+++Ss+m+vpt+l++ks+++mNY+P+
    KIAA0085   133 RSRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPS 182  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   q+D++h+qfi++++I++++fi+vLiFKvY++kCVW+CY++I+++Ns+e++
    KIAA0085   183 QEDMPHNQFIKMMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMNSVEEK 232  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   ++skm++  kvvLPsYEeAlSLP+ktPe++P+PP++S+   
    KIAA0085   233 RNSKMLQ--KVVLPSYEEALSLPSKTPEGGPAPPPYSE    268  

PF03821.6.ls: domain 1 of 1, from 36 to 268: score 582.2, E = 4.5e-172
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                      ++msvLL+I++sVEvAh+k+sCkls+mgYLRiADL+SSFLLIt+lf+
    KIAA0085    36    VIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISSFLLITMLFI 82   

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   islS+LiGvvKNREKYll+Fls+q+m++ll+l++Llg++ielpaY++las
    KIAA0085    83 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLAS 132  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                   Rsr++++k+P++++qL+DFcLsiL+++Ss+m+vpt+l++ks+++mNY+P+
    KIAA0085   133 RSRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPS 182  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   q+D++h+qfi++++I++++fi+vLiFKvY++kCVW+CY++I+++Ns+e++
    KIAA0085   183 QEDMPHNQFIKMMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMNSVEEK 232  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   ++skm++  kvvLPsYEeAlSLP+ktPe++P+PP++S+   
    KIAA0085   233 RNSKMLQ--KVVLPSYEEALSLPSKTPEGGPAPPPYSE    268  

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