# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01520.fasta.huge -Q ../query/KIAA0085.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0085, 269 aa vs ./tmplib.23147 library 1987236 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.4039+/-0.00486; mu= 14.7462+/- 0.332 mean_var=81.7631+/-19.449, 0's: 0 Z-trim: 1 B-trim: 5 in 1/39 Lambda= 0.141839 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0108 ( 254 res) ha00623 ( 254) 132 35.9 0.0022 >>KIAA0108 ( 254 res) ha00623 (254 aa) initn: 260 init1: 104 opt: 132 Z-score: 152.7 bits: 35.9 E(): 0.0022 Smith-Waterman score: 249; 25.926% identity (50.741% similar) in 270 aa overlap (11-266:34-251) 10 20 30 KIAA00 RGGDGSTMDPRLSTVRQTCC-CFNVRIATTALAIYHVIMS :. ..: :: : .:: .: :. ...... KIAA01 RVENVCQGPGQEGGPPVTMVSMSFKRNRSDRFYSTR--CCGCCHVRTGTIILGTWYMVVN 10 20 30 40 50 60 40 50 60 70 80 KIAA00 VLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----------FLLITMLFIISLSLLI .:. : .:::.: . : .. : :.. :: : . ...:::: :. KIAA01 LLMAILLTVEVTHPN-SMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVY 70 80 90 100 110 120 90 100 110 120 130 140 KIAA00 GVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLASRSRASSSKFPLMTLQLL :... . .:.::. ...:..: :. ..: :: : . ...: KIAA01 GAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP-------RIKEYLDQLP------- 130 140 150 160 150 160 170 180 190 200 KIAA00 DFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIKMMIIFSIAFITVLIFK :: : ..:. . ...: . : .::: KIAA01 DF-----------------------------PYKDDLLALDSSCLLFIVLVFFALFIIFK 170 180 190 210 220 230 240 250 260 KIAA00 VYMFKCVWRCYRLIKCMNSVEEKRNSKMLQ---KVVLPSYEEALSLPSKTPEGGPAPPPY .:...::: ::. :. : : : .. . :::.:: :...: : : :::: KIAA01 AYLINCVWNCYKYINNRN-VPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEP-----PPPY 200 210 220 230 240 250 KIAA00 SEV KIAA01 LPA 269 residues in 1 query sequences 1987236 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:14 2008 done: Thu Dec 18 15:07:15 2008 Total Scan time: 0.310 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]