hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16523560/chunk_1/iprscan-20080501-16523560.nocrc
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Query sequence: KIAA0082
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00443                                                  53.5    2.7e-11   1
SM00456                                                  37.0    2.5e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00443     1/1     132   178 ..     1    48 []    53.5  2.7e-11
SM00456     1/1     800   833 ..     1    34 []    37.0  2.5e-06

Alignments of top-scoring domains:
SM00443: domain 1 of 1, from 132 to 178: score 53.5, E = 2.7e-11
                   *->istsniGaklLekMGWkeGkGLGkneqGivePIeakikkkdrkGLGa
                        ++++++kl++kMG++eG+GLGk  qG+++ +ea  + k r+GLG 
    KIAA0082   132    SMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQ-KGRRGLGL 177  

                   v<-*
                       
    KIAA0082   178 T    178  

SM00456: domain 1 of 1, from 800 to 833: score 37.0, E = 2.5e-06
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      +++++W++ ++++++++++yN++Tk ++++ P++   
    KIAA0082   800    TVNEPWTMGFSKSFKKKFFYNKKTKDSTFDLPAD    833  

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