hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16491721/chunk_1/iprscan-20080501-16491721.nocrc
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Query sequence: KIAA0080
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 162.9    3.1e-44   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     228   332 ..     1    92 []    72.8  4.3e-17
SM00239    2/2     362   478 ..     1    92 []    90.1  2.5e-22

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 228 to 332: score 72.8, E = 4.3e-17
                   *->tLtvkiisArnLp.........DPYVkvs.........kTkvvkktl
                       L v+i +A++Lp  ++ + ++DPY+k++  ++++++ kT+v +ktl
    KIAA0080   228    ALVVTIQEAHGLPvmddqtqgsDPYIKMTilpdkrhrvKTRVLRKTL 274  

                   sgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvti
                       Pv++E   tF+F+ +p ++ ++  L++ V ++++ +++d+iG+v +
    KIAA0080   275 ---DPVFDE---TFTFYGIPysqlqdLvLHFLVLSFdrfsrdDVIGEVMV 318  

                   ppnnahqhsadglihlsell.ggrh.kl<-*
                   p              l  ++++ ++ +l   
    KIAA0080   319 P--------------LAGVDpSTGKvQL    332  

SM00239: domain 2 of 2, from 362 to 478: score 90.1, E = 2.5e-22
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                      ++tv +++Ar+Lp+ + ++ +++PYVkv    ++++  ++kT+v+k+
    KIAA0080   362    RMTVVVLKARHLPkmditglsgNPYVKVNvyygrkriakkKTHVKKC 408  

                   tlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvt
                   tl   NP++nE   +F +++p +  ++ ++e+ V D++++++++++Gr++
    KIAA0080   409 TL---NPIFNE---SFIYDIPTdllpdIsIEFLVIDFdrttknEVVGRLI 452  

                   ippnnahqhsadg..lihlsell.ggrh.kl<-*
                   ++     +hs+++++++h++e+++++r+++    
    KIAA0080   453 LG-----AHSVTAsgAEHWREVCeSPRKpVA    478  

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