hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16372102/chunk_1/iprscan-20080501-16372102.nocrc
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Query sequence: KIAA0073
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  90.9    1.5e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4      79   116 ..     1    46 []    22.7    0.052
SM00320    2/4     121   160 ..     1    46 []    24.5    0.015
SM00320    3/4     210   250 ..     1    46 []    15.9      1.5
SM00320    4/4     268   307 ..     1    46 []    27.8   0.0015

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 79 to 116: score 22.7, E = 0.052
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   r++  H++   +t+v    +       ++++++s+Dg++++W
    KIAA0073    79    AsMYERSYM-HRD--VITHVVCTKT-------DFIITAShDGHVKFW 115  

                   d<-*
                   +   
    KIAA0073   116 K    116  

SM00320: domain 2 of 4, from 121 to 160: score 24.5, E = 0.015
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + ++ ++ H g   + s+a+s+ g       l++s ++D+  +++
    KIAA0073   121    GiEFVKHFRSHLG--VIESIAVSSEG------ALFCSVGdDKAMKVF 159  

                   d<-*
                   d   
    KIAA0073   160 D    160  

SM00320: domain 3 of 4, from 210 to 250: score 15.9, E = 1.5
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++++l+++++ Ht+  p t ++ +p        + ++s+++ g i  
    KIAA0073   210    DnQPLHIFDkLHTS--PLTQIRLNPVY------KAVVSSDkSGMIEY 248  

                   Wd<-*
                   W    
    KIAA0073   249 WT    250  

SM00320: domain 4 of 4, from 268 to 307: score 27.8, E = 0.0015
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ l+++   ++  + tsv+fspdg      + +a+ ++D+++r++
    KIAA0073   268    TdTDLYEFAKCKA--YPTSVCFSPDG------KKIATIGsDRKVRIF 306  

                   d<-*
                       
    KIAA0073   307 R    307  

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