# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha01357.fasta.nr -Q ../query/KIAA0072.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0072, 503 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827263 sequences Expectation_n fit: rho(ln(x))= 5.2327+/-0.000181; mu= 10.9152+/- 0.010 mean_var=70.4003+/-13.711, 0's: 34 Z-trim: 36 B-trim: 0 in 0/68 Lambda= 0.152858 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|3122657|sp|Q16401.3|PSMD5_HUMAN RecName: Full=2 ( 504) 3201 715.1 1.1e-203 gi|158255538|dbj|BAF83740.1| unnamed protein produ ( 504) 3195 713.8 2.7e-203 gi|114626391|ref|XP_520224.2| PREDICTED: proteasom ( 504) 3195 713.8 2.7e-203 gi|66773843|sp|Q5IFJ8.3|PSMD5_MACFA RecName: Full= ( 504) 3153 704.5 1.6e-200 gi|122143228|sp|Q0P5A6.1|PSMD5_BOVIN RecName: Full ( 503) 3037 678.9 8.3e-193 gi|194225690|ref|XP_001501707.2| PREDICTED: simila ( 504) 2993 669.2 6.9e-190 gi|73972029|ref|XP_531929.2| PREDICTED: similar to ( 523) 2956 661.1 2e-187 gi|52783230|sp|Q8BJY1.4|PSMD5_MOUSE RecName: Full= ( 504) 2936 656.7 4.2e-186 gi|26347233|dbj|BAC37265.1| unnamed protein produc ( 504) 2924 654.0 2.6e-185 gi|149038941|gb|EDL93161.1| proteasome (prosome, m ( 504) 2909 650.7 2.6e-184 gi|126294022|ref|XP_001364758.1| PREDICTED: simila ( 504) 2796 625.8 8.2e-177 gi|60098827|emb|CAH65244.1| hypothetical protein [ ( 504) 2483 556.8 5e-156 gi|148676681|gb|EDL08628.1| proteasome (prosome, m ( 439) 2431 545.3 1.3e-152 gi|170284974|gb|AAI61160.1| Proteasome (prosome, m ( 505) 2250 505.4 1.5e-140 gi|56789608|gb|AAH88711.1| LOC496243 protein [Xeno ( 502) 2206 495.7 1.2e-137 gi|194381144|dbj|BAG64140.1| unnamed protein produ ( 461) 2080 467.9 2.6e-129 gi|210147423|ref|NP_001017573.2| proteasome 26S no ( 505) 1993 448.7 1.7e-123 gi|148676680|gb|EDL08627.1| proteasome (prosome, m ( 330) 1983 446.4 5.5e-123 gi|149038942|gb|EDL93162.1| proteasome (prosome, m ( 330) 1983 446.4 5.5e-123 gi|50369289|gb|AAH76043.1| Zgc:110116 protein [Dan ( 494) 1978 445.4 1.6e-122 gi|73971550|ref|XP_853353.1| PREDICTED: similar to ( 509) 1870 421.6 2.5e-115 gi|210101679|gb|EEA49741.1| hypothetical protein B ( 503) 1376 312.6 1.5e-82 gi|210108393|gb|EEA56294.1| hypothetical protein B ( 503) 1365 310.2 8.2e-82 gi|47215138|emb|CAG12429.1| unnamed protein produc ( 466) 1332 302.9 1.2e-79 gi|14714982|gb|AAH10650.1| Psmd5 protein [Mus musc ( 217) 1282 291.7 1.4e-76 gi|148676682|gb|EDL08629.1| proteasome (prosome, m ( 222) 1165 265.9 8e-69 gi|198420667|ref|XP_002129100.1| PREDICTED: simila ( 509) 1069 244.9 3.7e-62 gi|156545726|ref|XP_001605001.1| PREDICTED: hypoth ( 504) 1010 231.9 3e-58 gi|156213543|gb|EDO34558.1| predicted protein [Nem ( 505) 980 225.3 3e-56 gi|91091868|ref|XP_969098.1| PREDICTED: similar to ( 499) 972 223.5 1e-55 gi|194033945|ref|XP_001925536.1| PREDICTED: simila ( 408) 965 221.9 2.5e-55 gi|62531331|gb|AAH92738.1| Zgc:110116 [Danio rerio ( 291) 946 217.7 3.5e-54 gi|110764926|ref|XP_001120302.1| PREDICTED: simila ( 443) 930 214.2 5.6e-53 gi|115754834|ref|XP_793127.2| PREDICTED: similar t ( 358) 926 213.3 8.7e-53 gi|149038943|gb|EDL93163.1| proteasome (prosome, m ( 133) 804 186.1 4.9e-45 gi|215492598|gb|EEC02239.1| 26S proteasome regulat ( 319) 777 180.4 6.2e-43 gi|66347407|emb|CAI95117.1| proteasome (prosome, m ( 157) 703 163.9 2.9e-38 gi|212514786|gb|EEB17036.1| 26S proteasome non-ATP ( 492) 692 161.8 3.8e-37 gi|108870463|gb|EAT34688.1| conserved hypothetical ( 414) 675 158.0 4.5e-36 gi|108872668|gb|EAT36893.1| conserved hypothetical ( 489) 670 156.9 1.1e-35 gi|167879030|gb|EDS42413.1| conserved hypothetical ( 487) 648 152.1 3.2e-34 gi|193907108|gb|EDW05975.1| GI16181 [Drosophila mo ( 499) 539 128.1 5.5e-27 gi|194163663|gb|EDW78564.1| GK16123 [Drosophila wi ( 499) 533 126.7 1.4e-26 gi|194146611|gb|EDW62330.1| GJ16670 [Drosophila vi ( 501) 531 126.3 1.9e-26 gi|190618920|gb|EDV34444.1| GF21324 [Drosophila an ( 507) 528 125.6 3e-26 gi|198146983|gb|EDY73010.1| GA23967 [Drosophila ps ( 506) 525 125.0 4.8e-26 gi|168984440|emb|CAQ11712.1| proteasome (prosome, ( 139) 514 122.2 9.1e-26 gi|66347406|emb|CAI95116.1| proteasome (prosome, m ( 97) 511 121.4 1.1e-25 gi|190649952|gb|EDV47230.1| GG17761 [Drosophila er ( 504) 515 122.8 2.2e-25 gi|45446931|gb|AAF48236.3| CG12096 [Drosophila mel ( 506) 501 119.7 1.9e-24 >>gi|3122657|sp|Q16401.3|PSMD5_HUMAN RecName: Full=26S p (504 aa) initn: 3201 init1: 3201 opt: 3201 Z-score: 3813.2 bits: 715.1 E(): 1.1e-203 Smith-Waterman score: 3201; 100.000% identity (100.000% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE :::::::::::::::::::::::: gi|312 LRTYLSEGPYYVKPVSTTAVEGAE 490 500 >>gi|158255538|dbj|BAF83740.1| unnamed protein product [ (504 aa) initn: 3195 init1: 3195 opt: 3195 Z-score: 3806.1 bits: 713.8 E(): 2.7e-203 Smith-Waterman score: 3195; 99.801% identity (100.000% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|158 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRRQAAELRLGPLFSLLNENHREK 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE :::::::::::::::::::::::: gi|158 LRTYLSEGPYYVKPVSTTAVEGAE 490 500 >>gi|114626391|ref|XP_520224.2| PREDICTED: proteasome 26 (504 aa) initn: 3195 init1: 3195 opt: 3195 Z-score: 3806.1 bits: 713.8 E(): 2.7e-203 Smith-Waterman score: 3195; 99.801% identity (100.000% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|114 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALASSKTIAEIFGNPNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE :::::::::::::::::::::::: gi|114 LRTYLSEGPYYVKPVSTTAVEGAE 490 500 >>gi|66773843|sp|Q5IFJ8.3|PSMD5_MACFA RecName: Full=26S (504 aa) initn: 3153 init1: 3153 opt: 3153 Z-score: 3756.0 bits: 704.5 E(): 1.6e-200 Smith-Waterman score: 3153; 98.211% identity (99.404% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|667 MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELREQAAELRLGPLFSLLNENHREK 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 TALCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 VRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|667 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR ::: ::::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|667 FEMTESQDPTMTGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|667 CLDAISSLLYLPPEQQTDDLLRMTESWFSALSRDPLELFRGISSQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR ::::::::::::: :::::::::::::.::.::::::::::::::::::::::::::::: gi|667 IANQPWAQKLMFNIPGFVEYVVDRSVEQDKSSKDAKYELVKALANSKTIAEIFGNPNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE :::::::::::::::::::::::: gi|667 LRTYLSEGPYYVKPVSTTAVEGAE 490 500 >>gi|122143228|sp|Q0P5A6.1|PSMD5_BOVIN RecName: Full=26S (503 aa) initn: 2253 init1: 2225 opt: 3037 Z-score: 3617.8 bits: 678.9 E(): 8.3e-193 Smith-Waterman score: 3037; 93.837% identity (98.807% similar) in 503 aa overlap (1-503:2-503) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK :::::::::::.::::::::::::.:.::.:::.:::.::::::::::::::::::::. gi|122 MAAQALALLREVSRLEAPLEELRALQSLLQSVPLSELREQAAELRLGPLFSLLNENHREQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI ::::::::::::::.::::::::::::::::: ::.::::::::::.::::::::::::: gi|122 TTLCVSILERLLQALEPVHVARNLRVDLQRGLTHPNDSVKILTLSQVGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|122 LNNAELLKQIVYCIGGENLSVAKTAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::.::::::::::: ::::::::::::::::::::::::::::::::: :::: gi|122 VRYRVYELIVEISSVSPESLNCCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLACTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::.:::::::::::::::::::.::::::::::::::.::: gi|122 RQYLAQEGVIDQISNIIVGADADPFSSFYLPGFVKFFGNLAIMDSPQQICERYPIFMEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR ::: ::::::::::::::.:::::::::::::::::::::::::.::.:.::: .::::: gi|122 FEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA ::::.:::.:::::: :::::::::::::::::::::::::::.:::::::::::::::: gi|122 CLDALSSLFYLPPEQ-TDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTA 370 380 390 400 410 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|122 IANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR 420 430 440 450 460 470 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE ::::::::::::::.::::::::: gi|122 LRTYLSEGPYYVKPISTTAVEGAE 480 490 500 >>gi|194225690|ref|XP_001501707.2| PREDICTED: similar to (504 aa) initn: 2993 init1: 2993 opt: 2993 Z-score: 3565.3 bits: 669.2 E(): 6.9e-190 Smith-Waterman score: 2993; 91.849% identity (98.608% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK :::::::::::.::::::::::::.::::.:::.:::.:::::.::::::::.:::::. gi|194 MAAQALALLREVSRLEAPLEELRALQSVLQSVPLSELREQAAELHLGPLFSLLHENHREQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :.::::::::::::.:::::::::. :::::: ::.::::::::::.::::::::::::: gi|194 TALCVSILERLLQAVEPVHVARNLKGDLQRGLTHPSDSVKILTLSQVGRIVENSDAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :::::::::.::::::::::::::::::::::::::::::::::::::::::.::::::: gi|194 LNNAELLKQVVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDI 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG :::::::::.:::::::::::::.::::::::::::::::::::::::: ::::: :::: gi|194 VRYRVYELIVEISSVSPESLNYCATSGLVTQLLRELTGEDVLVRATCIETVTSLASTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV :::::::::::::::::::::::::::::::::::::::::.::::::.::::: ::::: gi|194 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQVCERYPAFVEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR ::: :::::::.::::::.::::::::::::::::::::::::..::.:.::: .::::: gi|194 FEMTESQDPTMVGVAVDTIGILGSNVEGKQVLQKTGTRFERLLVKIGYQAKNASTELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA ::::.::::::::::::::::::::::::::::::::::::::.::::.:.::::::::: gi|194 CLDALSSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPDLRCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR ::.::::::::::::::::::.:::::.:::::::::::::::::::::::::::::::: gi|194 IADQPWAQKLMFNSPGFVEYVMDRSVERDKASKDAKYELVKALANSKTIAEIFGNPNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE ::::::::::::::.::::::::: gi|194 LRTYLSEGPYYVKPISTTAVEGAE 490 500 >>gi|73972029|ref|XP_531929.2| PREDICTED: similar to 26S (523 aa) initn: 2956 init1: 2956 opt: 2956 Z-score: 3521.0 bits: 661.1 E(): 2e-187 Smith-Waterman score: 2956; 92.245% identity (98.571% similar) in 490 aa overlap (14-503:34-523) 10 20 30 40 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAEL ::.:::::::::::::.:::.::: :::: gi|739 RRRFTRVWPGSRRPTASAPPGAGAAAGAVALEVPLEELRALHSVLQTVPLGELRAPAAEL 10 20 30 40 50 60 50 60 70 80 90 100 KIAA00 RLGPLFSLLNENHREKTTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTL :::::::::.:.:::.:::::::::::::::::::.:::: .:::.:: ::::::::::: gi|739 RLGPLFSLLHEDHREQTTLCVSILERLLQAMEPVHIARNLGADLQKGLTHPDDSVKILTL 70 80 90 100 110 120 110 120 130 140 150 160 KIAA00 SQIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFE ::.::::::::::::::::.::::::::::::.:::::::::::::.::::::::::::: gi|739 SQVGRIVENSDAVTEILNNGELLKQIVYCIGGDNLSVAKAAIKSLSKISLTQAGLEALFE 130 140 150 160 170 180 170 180 190 200 210 220 KIAA00 SNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVR :::::::: ::::::::::::::::.::::::::::.::::::::::::::::::::::: gi|739 SNLLDDLKRVMKTNDIVRYRVYELIVEISSVSPESLTYCTTSGLVTQLLRELTGEDVLVR 190 200 210 220 230 240 230 240 250 260 270 280 KIAA00 ATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|739 ATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMD 250 260 270 280 290 300 290 300 310 320 330 340 KIAA00 SPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLM ::::::::::.:::::::: :::::::::::::::::::::.:::::::::::::::::: gi|739 SPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTVGILGSNIEGKQVLQKTGTRFERLLM 310 320 330 340 350 360 350 360 370 380 390 400 KIAA00 RIGHQSKNAPVELKIRCLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISS .::.:.::: .::::::::::::..:.::::::.:::::::::::.:::::::::::::. gi|739 KIGYQAKNASTELKIRCLDAISSIFYIPPEQQTEDLLRMTESWFSALSRDPLELFRGISN 370 380 390 400 410 420 410 420 430 440 450 460 KIAA00 QPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 QPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALA 430 440 450 460 470 480 470 480 490 500 KIAA00 NSKTIAEIFGNPNYLRLRTYLSEGPYYVKPVSTTAVEGAE ::::.:::::::::::::::::::::::::.::::::::: gi|739 NSKTVAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE 490 500 510 520 >>gi|52783230|sp|Q8BJY1.4|PSMD5_MOUSE RecName: Full=26S (504 aa) initn: 2994 init1: 2936 opt: 2936 Z-score: 3497.4 bits: 656.7 E(): 4.2e-186 Smith-Waterman score: 2936; 89.861% identity (98.012% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK ::::..::::::::::::::::::.::.:::::.:::.::::::: :::::::.:.::. gi|527 MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :.::::::::::::.::.:.:::::.:::::: ::::::: :::::::::::::.::::: gi|527 TALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::. gi|527 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDV 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG ::::::::::.::::: ::::::::::::::::.:::::::::::::::::::::::::: gi|527 VRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.:.::: gi|527 RQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR ::: .:::::::::::::::::::.::::::::::::::::.:::.:.:.::: .::::: gi|527 FEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQAKNASTELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA ::::.:::::: :::::::.: ::::::::.::: ::::::::.:::::::::::::::: gi|527 CLDAVSSLLYLSPEQQTDDFLGMTESWFSSMSRDSLELFRGISNQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR ::.:::::.::::::::::.:.::::::::::::::::::::::::::.:::::: :::: gi|527 IADQPWAQRLMFNSPGFVEFVMDRSVEHDKASKDAKYELVKALANSKTVAEIFGNSNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE ::.::::::::::::.:::::::. gi|527 LRAYLSEGPYYVKPVATTAVEGAD 490 500 >>gi|26347233|dbj|BAC37265.1| unnamed protein product [M (504 aa) initn: 2982 init1: 2924 opt: 2924 Z-score: 3483.1 bits: 654.0 E(): 2.6e-185 Smith-Waterman score: 2924; 89.662% identity (97.813% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK ::::..::::::::::::::::::.::.:::::.:::.::::::: :::::::.:.::. gi|263 MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :.::::::::::::.::.:.:::::.:::::: ::::::: :::::::::::::.::::: gi|263 TALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEI 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI ::::::::::::::::::::::::::::::::::::: ::::::::::::::.::::::. gi|263 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAVLEALFESNLLDDLKNVMKTNDV 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG ::::::::::.::::: ::::::::::::::::.:::::::::::::::::::::::::: gi|263 VRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.:.::: gi|263 RQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR ::: .:::::::::::::::::::.::::::::::::::::.:::.:.:.::: .::::: gi|263 FEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQAKNASTELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA ::::.:::::: :::::::.: ::::::::.::: ::::::::.:::::::::::::::: gi|263 CLDAVSSLLYLSPEQQTDDFLGMTESWFSSMSRDSLELFRGISNQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR ::.:::::.::::::::::.:.::::::::::::::::::::::::::.:::::: :::: gi|263 IADQPWAQRLMFNSPGFVEFVMDRSVEHDKASKDAKYELVKALANSKTVAEIFGNSNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE ::.::::::::::::.:::::::. gi|263 LRAYLSEGPYYVKPVATTAVEGAD 490 500 >>gi|149038941|gb|EDL93161.1| proteasome (prosome, macro (504 aa) initn: 2967 init1: 2909 opt: 2909 Z-score: 3465.2 bits: 650.7 E(): 2.6e-184 Smith-Waterman score: 2909; 89.264% identity (97.416% similar) in 503 aa overlap (1-503:2-504) 10 20 30 40 50 KIAA00 AAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREK ::::..::::::::::::::::::.::.:::::.:::.::::::: :::::::.:.::. gi|149 MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQ 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 TTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEI :.::::::::::::.::.:.:::::.:::::: ::::::: :::::::::::.:.::::. gi|149 TALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVEDSEAVTEV 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDI :.:::::.:.: ::::::::::::::::::::::::::::::::::::::::.::::::. gi|149 LSNAELLRQVVCCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDV 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 VRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG ::::::::::.::::: ::::::::::::::::::::::::::::::::::::::::::: gi|149 VRYRVYELIIDISSVSSESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHG 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 RQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKV ::::::::::::::::::::::::::.:::::::::::::::::::::::::::.:.::: gi|149 RQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKV 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 FEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIR : : .:::::::::::::::::::.:::::::::::::::::: :::.:.::: .::::: gi|149 FAMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERLLTRIGYQAKNASTELKIR 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 CLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTA ::::.:::::: :::::::.: ::::::::.::: ::::::::.:::::::::::::::: gi|149 CLDAVSSLLYLSPEQQTDDFLGMTESWFSSVSRDSLELFRGISNQPFPELHCAALKVFTA 370 380 390 400 410 420 420 430 440 450 460 470 KIAA00 IANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLR :::::::::::::::::::.:.::::::::.:::::::::::::::::.:::::: :::: gi|149 IANQPWAQKLMFNSPGFVEFVMDRSVEHDKTSKDAKYELVKALANSKTVAEIFGNSNYLR 430 440 450 460 470 480 480 490 500 KIAA00 LRTYLSEGPYYVKPVSTTAVEGAE :::::::::::::::.:::::::. gi|149 LRTYLSEGPYYVKPVATTAVEGAD 490 500 503 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 18:44:43 2009 done: Tue Mar 3 18:48:42 2009 Total Scan time: 1481.670 Total Display time: 0.220 Function used was FASTA [version 34.26.5 April 26, 2007]