hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16335849/chunk_1/iprscan-20080501-16335849.nocrc
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Query sequence: KIAA0071
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00717                                                  88.2      1e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/2     102   150 ..     1    53 []    38.7  8.1e-07
SM00717    2/2     293   341 ..     1    53 []    49.5  4.4e-10

Alignments of top-scoring domains:
SM00717: domain 1 of 2, from 102 to 150: score 38.7, E = 8.1e-07
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        +eWt e+  l+++a   +G    + +++I ++lp ++  ++++++
    KIAA0071   102    FPDEWTVEDKVLFEQAFSFHG----KTFHRIQQMLPDKSIASLVKFY 144  

                   rnllkp<-*
                   + ++k+   
    KIAA0071   145 YSWKKT    150  

SM00717: domain 2 of 2, from 293 to 341: score 49.5, E = 4.4e-10
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                         +Wt eE+ l ++a++kyG    +d+++I++ +++++++q+++++
    KIAA0071   293    CNARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFF 335  

                   rnllkp<-*
                    n+ ++   
    KIAA0071   336 VNYRRR    341  

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