# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00472.fasta.nr -Q ../query/KIAA0071.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0071, 396 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825368 sequences Expectation_n fit: rho(ln(x))= 5.5574+/-0.000187; mu= 9.1148+/- 0.010 mean_var=84.5672+/-16.451, 0's: 30 Z-trim: 40 B-trim: 68 in 1/66 Lambda= 0.139468 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|74762776|sp|Q9UKL0.1|RCOR1_HUMAN RecName: Full= ( 482) 2622 537.2 2.9e-150 gi|119602199|gb|EAW81793.1| REST corepressor 1, is ( 485) 2622 537.2 2.9e-150 gi|119602200|gb|EAW81794.1| REST corepressor 1, is ( 488) 2549 522.5 7.7e-146 gi|90103519|sp|Q8CFE3.2|RCOR1_MOUSE RecName: Full= ( 477) 2541 520.9 2.3e-145 gi|194038111|ref|XP_001927812.1| PREDICTED: simila ( 487) 2533 519.3 7.1e-145 gi|126290195|ref|XP_001367137.1| PREDICTED: simila ( 497) 2508 514.3 2.4e-143 gi|148686697|gb|EDL18644.1| REST corepressor 1, is ( 387) 2470 506.5 3.9e-141 gi|27503810|gb|AAH42731.1| REST corepressor 1 [Mus ( 382) 2438 500.1 3.4e-139 gi|114654936|ref|XP_522957.2| PREDICTED: REST core ( 391) 2406 493.7 3e-137 gi|148686698|gb|EDL18645.1| REST corepressor 1, is ( 408) 2392 490.9 2.2e-136 gi|194225376|ref|XP_001491572.2| PREDICTED: simila ( 383) 2358 484.0 2.4e-134 gi|149044102|gb|EDL97484.1| REST corepressor 1 (pr ( 501) 2350 482.5 8.9e-134 gi|194677014|ref|XP_582981.4| PREDICTED: similar t ( 430) 2327 477.8 1.9e-132 gi|73964508|ref|XP_855445.1| PREDICTED: similar to ( 450) 2313 475.0 1.4e-131 gi|169641910|gb|AAI60584.1| LOC733956 protein [Xen ( 434) 2214 455.1 1.4e-125 gi|89268897|emb|CAJ81645.1| REST corepressor 1 [Xe ( 432) 2202 452.7 7.3e-125 gi|82245407|sp|Q90WN5.1|RCOR1_XENLA RecName: Full= ( 431) 2185 449.2 7.8e-124 gi|114572470|ref|XP_001169683.1| PREDICTED: REST c ( 549) 1640 339.7 9.6e-91 gi|149490219|ref|XP_001514692.1| PREDICTED: simila ( 253) 1558 322.9 4.9e-86 gi|73983292|ref|XP_540889.2| PREDICTED: similar to ( 523) 1452 301.8 2.3e-79 gi|73983296|ref|XP_867275.1| PREDICTED: similar to ( 525) 1450 301.4 3e-79 gi|76657519|ref|XP_615207.2| PREDICTED: similar to ( 523) 1447 300.8 4.5e-79 gi|81909674|sp|Q5FWT8.1|RCOR2_RAT RecName: Full=RE ( 523) 1446 300.6 5.2e-79 gi|81914092|sp|Q8C796.1|RCOR2_MOUSE RecName: Full= ( 523) 1442 299.8 9.1e-79 gi|147744586|sp|Q8IZ40.2|RCOR2_HUMAN RecName: Full ( 523) 1442 299.8 9.1e-79 gi|23958561|gb|AAH23587.1| REST corepressor 2 [Hom ( 523) 1442 299.8 9.1e-79 gi|119594587|gb|EAW74181.1| REST corepressor 2, is ( 423) 1435 298.3 2.1e-78 gi|40352800|gb|AAH64495.1| RCOR1 protein [Homo sap ( 299) 1420 295.2 1.3e-77 gi|109105867|ref|XP_001118333.1| PREDICTED: simila ( 406) 1416 294.5 2.8e-77 gi|8346962|emb|CAB93943.1| CoREST protein [Mus mus ( 479) 1415 294.3 3.7e-77 gi|148701350|gb|EDL33297.1| REST corepressor 2 [Mu ( 491) 1415 294.3 3.8e-77 gi|29835193|gb|AAH51003.1| RCOR1 protein [Homo sap ( 293) 1401 291.4 1.8e-76 gi|26346306|dbj|BAC36804.1| unnamed protein produc ( 229) 1394 289.9 3.9e-76 gi|194218370|ref|XP_001488709.2| PREDICTED: simila ( 523) 1380 287.3 5.2e-75 gi|114638234|ref|XP_001162519.1| PREDICTED: REST c ( 517) 1304 272.0 2.1e-70 gi|114794805|pdb|2IW5|B Chain B, Structural Basis ( 235) 1274 265.7 7.4e-69 gi|66564701|ref|XP_392644.2| PREDICTED: similar to ( 419) 1263 263.7 5.3e-68 gi|212510615|gb|EEB13751.1| REST corepressor, puta ( 428) 1188 248.6 1.9e-63 gi|156212297|gb|EDO33362.1| predicted protein [Nem ( 350) 1186 248.2 2.1e-63 gi|149243977|pdb|2V1D|B Chain B, Structural Basis ( 178) 1152 241.1 1.5e-61 gi|120538168|gb|AAI29323.1| Zgc:158607 [Danio reri ( 458) 1124 235.8 1.5e-59 gi|220675627|emb|CAK11073.2| novel protein similar ( 458) 1124 235.8 1.5e-59 gi|157018128|gb|EAA08204.4| AGAP002488-PA [Anophel ( 431) 1014 213.6 6.6e-53 gi|58399112|gb|AAH89252.1| Rcor1 protein [Xenopus ( 225) 1005 211.6 1.4e-52 gi|210123384|gb|EEA71085.1| hypothetical protein B ( 490) 988 208.4 2.7e-51 gi|90103521|sp|Q6PGA0.2|RCOR3_MOUSE RecName: Full= ( 451) 969 204.6 3.6e-50 gi|149641517|ref|XP_001509399.1| PREDICTED: simila ( 704) 968 204.5 5.9e-50 gi|197246106|gb|AAI69033.1| Unknown (protein for M ( 551) 963 203.4 9.8e-50 gi|55665699|emb|CAH72432.1| REST corepressor 3 [Ho ( 436) 948 200.3 6.6e-49 gi|114572472|ref|XP_001169808.1| PREDICTED: REST c ( 445) 948 200.4 6.7e-49 >>gi|74762776|sp|Q9UKL0.1|RCOR1_HUMAN RecName: Full=REST (482 aa) initn: 2622 init1: 2622 opt: 2622 Z-score: 2854.0 bits: 537.2 E(): 2.9e-150 Smith-Waterman score: 2622; 100.000% identity (100.000% similar) in 396 aa overlap (1-396:87-482) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFD :::::::::::::::::::::::::::::: gi|747 SAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFD 60 70 80 90 100 110 40 50 60 70 80 90 KIAA00 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE 120 130 140 150 160 170 100 110 120 130 140 150 KIAA00 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT 180 190 200 210 220 230 160 170 180 190 200 210 KIAA00 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE 240 250 260 270 280 290 220 230 240 250 260 270 KIAA00 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN 300 310 320 330 340 350 280 290 300 310 320 330 KIAA00 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 360 370 380 390 400 410 340 350 360 370 380 390 KIAA00 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDV 420 430 440 450 460 470 KIAA00 RYASAS :::::: gi|747 RYASAS 480 >>gi|119602199|gb|EAW81793.1| REST corepressor 1, isofor (485 aa) initn: 2622 init1: 2622 opt: 2622 Z-score: 2853.9 bits: 537.2 E(): 2.9e-150 Smith-Waterman score: 2622; 100.000% identity (100.000% similar) in 396 aa overlap (1-396:90-485) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFD :::::::::::::::::::::::::::::: gi|119 SAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFD 60 70 80 90 100 110 40 50 60 70 80 90 KIAA00 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE 120 130 140 150 160 170 100 110 120 130 140 150 KIAA00 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT 180 190 200 210 220 230 160 170 180 190 200 210 KIAA00 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE 240 250 260 270 280 290 220 230 240 250 260 270 KIAA00 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN 300 310 320 330 340 350 280 290 300 310 320 330 KIAA00 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 360 370 380 390 400 410 340 350 360 370 380 390 KIAA00 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDV 420 430 440 450 460 470 KIAA00 RYASAS :::::: gi|119 RYASAS 480 >>gi|119602200|gb|EAW81794.1| REST corepressor 1, isofor (488 aa) initn: 2549 init1: 2549 opt: 2549 Z-score: 2774.5 bits: 522.5 E(): 7.7e-146 Smith-Waterman score: 2549; 100.000% identity (100.000% similar) in 384 aa overlap (1-384:90-473) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFD :::::::::::::::::::::::::::::: gi|119 SAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFD 60 70 80 90 100 110 40 50 60 70 80 90 KIAA00 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE 120 130 140 150 160 170 100 110 120 130 140 150 KIAA00 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT 180 190 200 210 220 230 160 170 180 190 200 210 KIAA00 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE 240 250 260 270 280 290 220 230 240 250 260 270 KIAA00 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN 300 310 320 330 340 350 280 290 300 310 320 330 KIAA00 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 360 370 380 390 400 410 340 350 360 370 380 390 KIAA00 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDV :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEVNLKQN 420 430 440 450 460 470 KIAA00 RYASAS gi|119 SHFSCQVHA 480 >>gi|90103519|sp|Q8CFE3.2|RCOR1_MOUSE RecName: Full=REST (477 aa) initn: 2496 init1: 2496 opt: 2541 Z-score: 2766.0 bits: 520.9 E(): 2.3e-145 Smith-Waterman score: 2541; 96.222% identity (99.244% similar) in 397 aa overlap (1-396:81-477) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFD ::::::::::::::::::::::::.::::: gi|901 SAAAXPNNGQNKSLAAAAPNGNSGSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAAVPDFD 60 70 80 90 100 110 40 50 60 70 80 90 KIAA00 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|901 PAKLARRSQERDNLGMLVWSPNQSLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE 120 130 140 150 160 170 100 110 120 130 140 150 KIAA00 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT 180 190 200 210 220 230 160 170 180 190 200 210 KIAA00 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE :::::::::::::::::::::::::::.::.::.:::.: :::::::::::::::::::: gi|901 RTKTSVMDRHARKQKREREESEDELEETNGSNPVDIEIDPNKESKKEVPPTETVPQVKKE 240 250 260 270 280 290 220 230 240 250 260 270 KIAA00 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|901 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTN 300 310 320 330 340 350 280 290 300 310 320 330 KIAA00 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 360 370 380 390 400 410 340 350 360 370 380 KIAA00 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLD :::::::::::::::::::::::::::.:::::.::::::::..:::.::::::: ::: gi|901 VKNFFVNYRRRFNIDEVLQEWEAEHGKDETNGPANQKPVKSPESSIKIPEEEDEAASVLD 420 430 440 450 460 470 390 KIAA00 VRYASAS ::::::: gi|901 VRYASAS >>gi|194038111|ref|XP_001927812.1| PREDICTED: similar to (487 aa) initn: 2492 init1: 2492 opt: 2533 Z-score: 2757.1 bits: 519.3 E(): 7.1e-145 Smith-Waterman score: 2533; 95.466% identity (98.489% similar) in 397 aa overlap (1-396:91-487) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFD :::::::::: ::::::::::::::::::: gi|194 SAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEPGGGGMRVGPQYQAVVPDFD 70 80 90 100 110 120 40 50 60 70 80 90 KIAA00 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 PAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIE 130 140 150 160 170 180 100 110 120 130 140 150 KIAA00 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT 190 200 210 220 230 240 160 170 180 190 200 210 KIAA00 RTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKE ::::::::::::::::::::::::::. ::.::.: :.:::::::::::::::.::.::: gi|194 RTKTSVMDRHARKQKREREESEDELEDPNGTNPVDAEIDQNKESKKEVPPTETIPQIKKE 250 260 270 280 290 300 220 230 240 250 260 270 KIAA00 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTN ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|194 KHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTN 310 320 330 340 350 360 280 290 300 310 320 330 KIAA00 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 370 380 390 400 410 420 340 350 360 370 380 KIAA00 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLD ::::::::::::::::::::::::::::::::::::.:::::.: .:::.::::: ::: gi|194 VKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQRPVKSPENPLKMPDEEDEAASVLD 430 440 450 460 470 480 390 KIAA00 VRYASAS ::.:::: gi|194 VRFASAS >>gi|126290195|ref|XP_001367137.1| PREDICTED: similar to (497 aa) initn: 2463 init1: 2463 opt: 2508 Z-score: 2729.8 bits: 514.3 E(): 2.4e-143 Smith-Waterman score: 2508; 95.707% identity (98.485% similar) in 396 aa overlap (2-396:102-497) 10 20 30 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDP :::::::::::::::::::::::::::::: gi|126 GSANNGHNKSLAAAATAAPNGNSTNSWEEASSGSSSDEEHGGGGMRVGPQYQAVVPDFDP 80 90 100 110 120 130 40 50 60 70 80 90 KIAA00 AKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEK ::..::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AKISRRSQERENLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEK 140 150 160 170 180 190 100 110 120 130 140 150 KIAA00 SLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTR 200 210 220 230 240 250 160 170 180 190 200 210 KIAA00 TKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEK ::::::::::::::::::::::::::.:::::::::::::::::::::::::.::.:::: gi|126 TKTSVMDRHARKQKREREESEDELEETNGNNPIDIEVDQNKESKKEVPPTETIPQIKKEK 260 270 280 290 300 310 220 230 240 250 260 270 KIAA00 HSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNS :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|126 HSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNS 320 330 340 350 360 370 280 290 300 310 320 330 KIAA00 ALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV ::::::::::: ::::::::: :::::::::::::::::::::::::::::::::::::: gi|126 ALKEKLDGGIEQYRLPEVIQKFNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV 380 390 400 410 420 430 340 350 360 370 380 390 KIAA00 KNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP-VLDV ::::::::::::::::::::::::::::::: :.:::.::::: ::.::::.:: :::: gi|126 KNFFVNYRRRFNIDEVLQEWEAEHGKEETNGTSTQKPIKSPDNPIKIPEEEEEATSVLDV 440 450 460 470 480 490 KIAA00 RYASAS :::::: gi|126 RYASAS >>gi|148686697|gb|EDL18644.1| REST corepressor 1, isofor (387 aa) initn: 2425 init1: 2425 opt: 2470 Z-score: 2690.0 bits: 506.5 E(): 3.9e-141 Smith-Waterman score: 2470; 96.114% identity (99.223% similar) in 386 aa overlap (12-396:2-387) 10 20 30 40 50 60 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKL :::::::::::::.::::::::::::::::::::::::::::.:::::: gi|148 AGGGGMRVGPQYQAAVPDFDPAKLARRSQERDNLGMLVWSPNQSLSEAKL 10 20 30 40 50 70 80 90 100 110 120 KIAA00 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF 60 70 80 90 100 110 130 140 150 160 170 180 KIAA00 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|148 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNG 120 130 140 150 160 170 190 200 210 220 230 240 KIAA00 NNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA .::.:::.: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA 180 190 200 210 220 230 250 260 270 280 290 300 KIAA00 NATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|148 NATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA00 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|148 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKDET 300 310 320 330 340 350 370 380 390 KIAA00 NGPSNQKPVKSPDNSIKMPEEEDEAP-VLDVRYASAS :::.::::::::..:::.::::::: :::::::::: gi|148 NGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS 360 370 380 >>gi|27503810|gb|AAH42731.1| REST corepressor 1 [Mus mus (382 aa) initn: 2393 init1: 2393 opt: 2438 Z-score: 2655.3 bits: 500.1 E(): 3.4e-139 Smith-Waterman score: 2438; 96.073% identity (99.215% similar) in 382 aa overlap (16-396:1-382) 10 20 30 40 50 60 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKL :::::::::.::::::::::::::::::::::::::::.:::::: gi|275 MRVGPQYQAAVPDFDPAKLARRSQERDNLGMLVWSPNQSLSEAKL 10 20 30 40 70 80 90 100 110 120 KIAA00 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|275 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNG 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 NNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA .::.:::.: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 SNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 NATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|275 NATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|275 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKDET 290 300 310 320 330 340 370 380 390 KIAA00 NGPSNQKPVKSPDNSIKMPEEEDEAP-VLDVRYASAS :::.::::::::..:::.::::::: :::::::::: gi|275 NGPANQKPVKSPESSIKIPEEEDEAASVLDVRYASAS 350 360 370 380 >>gi|114654936|ref|XP_522957.2| PREDICTED: REST corepres (391 aa) initn: 2403 init1: 2403 opt: 2406 Z-score: 2620.4 bits: 493.7 E(): 3e-137 Smith-Waterman score: 2406; 96.850% identity (97.638% similar) in 381 aa overlap (16-396:17-391) 10 20 30 40 50 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAK . ::: . : : :::::::::::::::::::::::::::: gi|114 MFQQTLASPISILTLMLSVGP----IGP--DTAKLARRSQERDNLGMLVWSPNQNLSEAK 10 20 30 40 50 60 70 80 90 100 110 KIAA00 LDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFS 60 70 80 90 100 110 120 130 140 150 160 170 KIAA00 FHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEAN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|114 FHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETN 120 130 140 150 160 170 180 190 200 210 220 230 KIAA00 GNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVS 180 190 200 210 220 230 240 250 260 270 280 290 KIAA00 ANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTT 240 250 260 270 280 290 300 310 320 330 340 350 KIAA00 EEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEE 300 310 320 330 340 350 360 370 380 390 KIAA00 TNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYASAS ::::::::::::::::::::::::::::::::::::: gi|114 TNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYASAS 360 370 380 390 >>gi|148686698|gb|EDL18645.1| REST corepressor 1, isofor (408 aa) initn: 2548 init1: 2392 opt: 2392 Z-score: 2604.9 bits: 490.9 E(): 2.2e-136 Smith-Waterman score: 2392; 95.467% identity (98.933% similar) in 375 aa overlap (16-390:1-375) 10 20 30 40 50 60 KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKL :::::::::.::::::::::::::::::::::::::::.:::::: gi|148 MRVGPQYQAAVPDFDPAKLARRSQERDNLGMLVWSPNQSLSEAKL 10 20 30 40 70 80 90 100 110 120 KIAA00 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSF 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|148 HGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEETNG 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 NNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA .::.:::.: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SNPVDIEIDPNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSA 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 NATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|148 NATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTE 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|148 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKDET 290 300 310 320 330 340 370 380 390 KIAA00 NGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRYASAS :::.::::::::..:::.::::::. : : gi|148 NGPANQKPVKSPESSIKIPEEEDEVNVEGVVSSLHQAHIPSHSAVAMLTWAASVLDVRYA 350 360 370 380 390 400 396 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 18:39:51 2009 done: Tue Mar 3 18:44:42 2009 Total Scan time: 1486.030 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]