# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01025.fasta.huge -Q ../query/KIAA0068.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0068, 1271 aa vs ./tmplib.23147 library 1986234 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.3163+/-0.00542; mu= 8.5639+/- 0.368 mean_var=99.5627+/-23.542, 0's: 0 Z-trim: 2 B-trim: 150 in 1/39 Lambda= 0.128536 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1168 ( 1304 res) hk07410 (1304) 4101 772.0 0 >>KIAA1168 ( 1304 res) hk07410 (1304 aa) initn: 7480 init1: 4101 opt: 4101 Z-score: 4106.0 bits: 772.0 E(): 0 Smith-Waterman score: 7434; 85.031% identity (93.981% similar) in 1296 aa overlap (1-1271:9-1303) 10 20 30 40 50 KIAA00 GNSQGPPRTPKPPRTQPRMAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPS : : :: : :...:::::::::::::::::::::::::::::: KIAA11 ARGPAVASGPSPGPAAEPVQNTETAAMTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPS 10 20 30 40 50 60 60 70 80 90 100 110 KIAA00 SLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIP :..:: ::.:::::::::::::::::::::::::::::::::.::::::::::::::::: KIAA11 SIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIP 70 80 90 100 110 120 120 130 140 150 160 170 KIAA00 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVS :::::::::::::::::::::::::::::.::::::.::::::.::.::::::::::::: KIAA11 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVS 130 140 150 160 170 180 180 190 200 210 220 230 KIAA00 EAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA11 EAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL 190 200 210 220 230 240 240 250 260 270 280 290 KIAA00 ANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLM ::::.::: :.:::::: :::::::::::.:::::::.:::::::::::::::::::::: KIAA11 ANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLM 250 260 270 280 290 300 300 310 320 330 340 350 KIAA00 DGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC ::.::::::::::::::::::::.:::::::::::::::::::::.::::::::::.::: KIAA11 DGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWTC 310 320 330 340 350 360 360 370 380 390 400 410 KIAA00 TSSGSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLA :.:. ::::::::::.:::.::.::::::::::::::::::: ..::.: :::.::::: KIAA11 TQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSG-LDSQKSDEEYRELFDLA 370 380 390 400 410 420 430 440 450 460 470 KIAA00 LQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSEEKFALVEV :.::::::.:::::::::::::::::::. ::::: .:::::::::::::::::::.::: KIAA11 LRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEV 420 430 440 450 460 470 480 490 500 510 520 530 KIAA00 IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI :::::::::::::::::::.:::.:.:::::::.:::::::::::..:::::. :::::: KIAA11 IAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAI 480 490 500 510 520 530 540 550 560 570 KIAA00 RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQ---------------- :::.:::: :.:: ::: ::::::::.::::::::::::::::: KIAA11 RKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQACQWSPRALFHPTGGT 540 550 560 570 580 590 580 590 600 610 620 KIAA00 ---------LYMVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFS ::::::::::::::::::::::::::.:: .: :: ::..:::.:::.:.: KIAA11 QGRRGCRSLLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNIS 600 610 620 630 640 650 630 640 650 660 670 680 KIAA00 ETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLD :.:::::::::::::::::::::::::::::::::::::::::::::: :::::::: :: KIAA11 EALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLD 660 670 680 690 700 710 690 700 710 720 730 740 KIAA00 LYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRS ::::::.::::.:.::::::::::::::::::::::::::::::::.::::.:::::.:. KIAA11 LYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRA 720 730 740 750 760 770 750 760 770 780 790 800 KIAA00 ECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFES :::: :. : :::::::::::::::::::::::::::::::.::::::::. ::.:::: KIAA11 ECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFES 780 790 800 810 820 830 810 820 830 840 850 860 KIAA00 EDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNY :::::::::. ::::::.::.:: ...:::.::::::::::::::::::::::::::::. KIAA11 EDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNF 840 850 860 870 880 890 870 880 890 900 910 920 KIAA00 DFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFV ::::::::::::::::::..::.:: :::: :.:: ::.::: ::.::: ::.:::::: KIAA11 DFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFV 900 910 920 930 940 950 930 940 950 960 970 980 KIAA00 GPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGS :::::..:::::::::::::::::::.::::::::::::::::.:::::::::::::::: KIAA11 GPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGS 960 970 980 990 1000 1010 990 1000 1010 1020 1030 1040 KIAA00 PGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQ ::::::::::::::.::::::: ::.::::::::::::::::.:: ::::::::::::: KIAA11 PGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQ 1020 1030 1040 1050 1060 1070 1050 1060 1070 1080 1090 1100 KIAA00 NILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG ::::::..::::::...:::::.::::::::::::::::::::::::::::::::::::: KIAA11 NILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG 1080 1090 1100 1110 1120 1130 1110 1120 1130 1140 1150 1160 KIAA00 LSMFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTV :::::::::::::.:.::::::: :.:::::::::::::::::::::::::::::.:::. KIAA11 LSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTA 1140 1150 1160 1170 1180 1190 1170 1180 1190 1200 1210 1220 KIAA00 EQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIR ::::::::.:::: ::::::::::: ..::::::::::..:::::::::::::::..::: KIAA11 EQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIR 1200 1210 1220 1230 1240 1250 1230 1240 1250 1260 1270 KIAA00 KFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS :.::::.:...::.::.:: . ... ::::::::::::::::.. KIAA11 KYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC 1260 1270 1280 1290 1300 1271 residues in 1 query sequences 1986234 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:39 2008 done: Thu Dec 18 15:06:40 2008 Total Scan time: 0.720 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]