# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01025.fasta.huge -Q ../query/KIAA0068.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA0068, 1271 aa
vs ./tmplib.23147 library
1986234 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 6.3163+/-0.00542; mu= 8.5639+/- 0.368
mean_var=99.5627+/-23.542, 0's: 0 Z-trim: 2 B-trim: 150 in 1/39
Lambda= 0.128536
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 40, opt: 28, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1168 ( 1304 res) hk07410 (1304) 4101 772.0 0
>>KIAA1168 ( 1304 res) hk07410 (1304 aa)
initn: 7480 init1: 4101 opt: 4101 Z-score: 4106.0 bits: 772.0 E(): 0
Smith-Waterman score: 7434; 85.031% identity (93.981% similar) in 1296 aa overlap (1-1271:9-1303)
10 20 30 40 50
KIAA00 GNSQGPPRTPKPPRTQPRMAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPS
: : :: : :...::::::::::::::::::::::::::::::
KIAA11 ARGPAVASGPSPGPAAEPVQNTETAAMTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPS
10 20 30 40 50 60
60 70 80 90 100 110
KIAA00 SLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIP
:..:: ::.:::::::::::::::::::::::::::::::::.:::::::::::::::::
KIAA11 SIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIP
70 80 90 100 110 120
120 130 140 150 160 170
KIAA00 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVS
:::::::::::::::::::::::::::::.::::::.::::::.::.:::::::::::::
KIAA11 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVS
130 140 150 160 170 180
180 190 200 210 220 230
KIAA00 EAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
KIAA11 EAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL
190 200 210 220 230 240
240 250 260 270 280 290
KIAA00 ANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLM
::::.::: :.:::::: :::::::::::.:::::::.::::::::::::::::::::::
KIAA11 ANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLM
250 260 270 280 290 300
300 310 320 330 340 350
KIAA00 DGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC
::.::::::::::::::::::::.:::::::::::::::::::::.::::::::::.:::
KIAA11 DGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWTC
310 320 330 340 350 360
360 370 380 390 400 410
KIAA00 TSSGSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLA
:.:. ::::::::::.:::.::.::::::::::::::::::: ..::.: :::.:::::
KIAA11 TQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSG-LDSQKSDEEYRELFDLA
370 380 390 400 410
420 430 440 450 460 470
KIAA00 LQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDSAEEYERATRYNYTSEEKFALVEV
:.::::::.:::::::::::::::::::. ::::: .:::::::::::::::::::.:::
KIAA11 LRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEV
420 430 440 450 460 470
480 490 500 510 520 530
KIAA00 IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI
:::::::::::::::::::.:::.:.:::::::.:::::::::::..:::::. ::::::
KIAA11 IAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAI
480 490 500 510 520 530
540 550 560 570
KIAA00 RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQ----------------
:::.:::: :.:: ::: ::::::::.:::::::::::::::::
KIAA11 RKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQACQWSPRALFHPTGGT
540 550 560 570 580 590
580 590 600 610 620
KIAA00 ---------LYMVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFS
::::::::::::::::::::::::::.:: .: :: ::..:::.:::.:.:
KIAA11 QGRRGCRSLLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNIS
600 610 620 630 640 650
630 640 650 660 670 680
KIAA00 ETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLD
:.:::::::::::::::::::::::::::::::::::::::::::::: :::::::: ::
KIAA11 EALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLD
660 670 680 690 700 710
690 700 710 720 730 740
KIAA00 LYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRS
::::::.::::.:.::::::::::::::::::::::::::::::::.::::.:::::.:.
KIAA11 LYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRA
720 730 740 750 760 770
750 760 770 780 790 800
KIAA00 ECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFES
:::: :. : :::::::::::::::::::::::::::::::.::::::::. ::.::::
KIAA11 ECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFES
780 790 800 810 820 830
810 820 830 840 850 860
KIAA00 EDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNY
:::::::::. ::::::.::.:: ...:::.::::::::::::::::::::::::::::.
KIAA11 EDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNF
840 850 860 870 880 890
870 880 890 900 910 920
KIAA00 DFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFV
::::::::::::::::::..::.:: :::: :.:: ::.::: ::.::: ::.::::::
KIAA11 DFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFV
900 910 920 930 940 950
930 940 950 960 970 980
KIAA00 GPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGS
:::::..:::::::::::::::::::.::::::::::::::::.::::::::::::::::
KIAA11 GPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGS
960 970 980 990 1000 1010
990 1000 1010 1020 1030 1040
KIAA00 PGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQ
::::::::::::::.::::::: ::.::::::::::::::::.:: :::::::::::::
KIAA11 PGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQ
1020 1030 1040 1050 1060 1070
1050 1060 1070 1080 1090 1100
KIAA00 NILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG
::::::..::::::...:::::.:::::::::::::::::::::::::::::::::::::
KIAA11 NILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCG
1080 1090 1100 1110 1120 1130
1110 1120 1130 1140 1150 1160
KIAA00 LSMFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTV
:::::::::::::.:.::::::: :.:::::::::::::::::::::::::::::.:::.
KIAA11 LSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTA
1140 1150 1160 1170 1180 1190
1170 1180 1190 1200 1210 1220
KIAA00 EQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIR
::::::::.:::: ::::::::::: ..::::::::::..:::::::::::::::..:::
KIAA11 EQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIR
1200 1210 1220 1230 1240 1250
1230 1240 1250 1260 1270
KIAA00 KFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLASS
:.::::.:...::.::.:: . ... ::::::::::::::::..
KIAA11 KYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC
1260 1270 1280 1290 1300
1271 residues in 1 query sequences
1986234 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:06:39 2008 done: Thu Dec 18 15:06:40 2008
Total Scan time: 0.720 Total Display time: 0.100
Function used was FASTA [version 34.26.5 April 26, 2007]