hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16272647/chunk_1/iprscan-20080501-16272647.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0067 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 246.3 5.8e-71 1 PF00856.18.fs SET domain 244.7 1.8e-70 1 PF05033.6.fs Pre-SET motif 175.4 1.8e-53 1 PF05033.6.ls Pre-SET motif 177.3 3.5e-50 1 PF01429.10.fs Methyl-CpG binding domain 94.6 5.3e-26 1 PF01429.10.ls Methyl-CpG binding domain 96.2 9.3e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01429.10.fs 1/1 603 677 .. 1 129 [] 94.6 5.3e-26 PF01429.10.ls 1/1 603 677 .. 1 129 [] 96.2 9.3e-26 PF05033.6.fs 1/1 690 804 .. 1 123 [] 175.4 1.8e-53 PF05033.6.ls 1/1 690 804 .. 1 123 [] 177.3 3.5e-50 PF00856.18.fs 1/1 806 1282 .. 1 259 [] 244.7 1.8e-70 PF00856.18.ls 1/1 806 1282 .. 1 259 [] 246.3 5.8e-71 Alignments of top-scoring domains: PF01429.10.fs: domain 1 of 1, from 603 to 677: score 94.6, E = 5.3e-26 *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk +r+k+++++pL++++rR+t++R++++++ KIAA0067 603 YRGKNPLLVPLLYDFRRMTARRRVNRKM------------------G 631 fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs f+V+Y +P+G++lr+++e++rYL+++g KIAA0067 632 FHVIYKTPCGLCLRTMQEIERYLFETG----------------------- 658 rarrngksnkKvsvtslkledFdFttrkevgr<-* +++l+le+F+++++ +v+r KIAA0067 659 -------------CDFLFLEMFCLDPYVLVDR 677 PF01429.10.ls: domain 1 of 1, from 603 to 677: score 96.2, E = 9.3e-26 *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk +r+k+++++pL++++rR+t++R++++++ KIAA0067 603 YRGKNPLLVPLLYDFRRMTARRRVNRKM------------------G 631 fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs f+V+Y +P+G++lr+++e++rYL+++g KIAA0067 632 FHVIYKTPCGLCLRTMQEIERYLFETG----------------------- 658 rarrngksnkKvsvtslkledFdFttrkevgr<-* +++l+le+F+++++ +v+r KIAA0067 659 -------------CDFLFLEMFCLDPYVLVDR 677 PF05033.6.fs: domain 1 of 1, from 690 to 804: score 175.4, E = 1.8e-53 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW Di++gkE+vp+++v Ne+D+ +p P + Y++e+i+g+gv+++ ++ KIAA0067 690 DITYGKEDVPLSCV-NEIDTTPP-P-QVAYSKERIPGKGVFINTGP- 732 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPg.lvfpneeydn ef++GC+C+d +C+ d+skCaC++l+++++a++Pg++ +pn++y++ KIAA0067 733 ---EFLVGCDCKD--GCR-DKSKCACHQLTIQATACTPGgQINPNSGYQY 776 dgilvepgpvIYECNsrCkCgp.sCkNR<-* +++ + ++++YECN+rCkC+p++C NR KIAA0067 777 KRLEECLPTGVYECNKRCKCDPnMCTNR 804 PF05033.6.ls: domain 1 of 1, from 690 to 804: score 177.3, E = 3.5e-50 *->DisrgkEsvpIplvENeVDldkpiPedFtYIneyiygegvipiqseW Di++gkE+vp+++v Ne+D+ +p P + Y++e+i+g+gv+++ ++ KIAA0067 690 DITYGKEDVPLSCV-NEIDTTPP-P-QVAYSKERIPGKGVFINTGP- 732 WSleftsGCeCtddlsCspdsskCaCgrlsgnggaypPg.lvfpneeydn ef++GC+C+d +C+ d+skCaC++l+++++a++Pg++ +pn++y++ KIAA0067 733 ---EFLVGCDCKD--GCR-DKSKCACHQLTIQATACTPGgQINPNSGYQY 776 dgilvepgpvIYECNsrCkCgp.sCkNR<-* +++ + ++++YECN+rCkC+p++C NR KIAA0067 777 KRLEECLPTGVYECNKRCKCDPnMCTNR 804 PF00856.18.fs: domain 1 of 1, from 806 to 1282: score 244.7, E = 1.8e-70 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae vq+g ++rl++fkt++kGwG+r+++dI+kG+f++ Y+G+++t++ a+ KIAA0067 806 VQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFAD 852 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy k + + + ++ Y+ +ld+ KIAA0067 853 KEG------LEMGDE-------YFANLDH--------------------- 868 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhk.lFp.dv. ie+v+++k+++++d++ KIAA0067 869 ----------------------------------IESVENFKeGYEsDAp 884 ....................e.eefsfed..........flWaasivsSR ++++++ + ++++++++++e++e+s +d+++++ +++ ++++s+++S+ KIAA0067 885 cssdssgvdlkdqedgnsgtEdPEESNDDssddnfckdeDFSTSSVWRSY 934 afsl.............................................. a +++++++++++ ++++++++++++ ++++ + +++ + ++ +++++++ KIAA0067 935 ATRRqtrgqkenglsettskdshppdlgpphipvppsipvggcnppssee 984 .................................................. +++++ + + ++ ++++ +++++++ +++++++++ ++++ + ++ + KIAA0067 985 tpknkvaswlscnsvseggfadsdshssfktneggegraggsrmeaekas 1034 .................................................. +++ + +++++ ++ ++++++++++ + ++++++ + ++++ ++++ ++ KIAA0067 1035 tsglgikdegdikqakkedtddrnkmsvvtessrnygynpspvkpeglrr 1084 .................................................. ++++++ +++++ + ++++++ + +++++++++++++++++ ++++ KIAA0067 1085 ppsktsmhqsrrlmasaqsnpddvltlssstesegesgtsrkptagqtsa 1134 .................................................. + ++++ ++ ++++++++ +++++ +++ +++ +++++ +++++ KIAA0067 1135 tavdsddiqtissgsegddfedkknmtgpmkrqvavkstrgfalksthgi 1184 ............ve..gv..n.resensegslelviDAtrkGNiaRFiNH ++++ + +++e+ +v++n+r+++++e+s +++iDA+ GN++R++NH KIAA0067 1185 aikstnmasvdkGEsaPVrkNtRQFYDGEES-CYIIDAKLEGNLGRYLNH 1233 SCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeELtyd SC+PN++vq+vfvd++d+ ++p++++fA + I+aG+ELt+d KIAA0067 1234 SCSPNLFVQNVFVDTHDL----------RFPWVAFFASKRIRAGTELTWD 1273 Ygydksnge<-* Y+y+ + +e KIAA0067 1274 YNYEVGSVE 1282 PF00856.18.ls: domain 1 of 1, from 806 to 1282: score 246.3, E = 5.8e-71 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae vq+g ++rl++fkt++kGwG+r+++dI+kG+f++ Y+G+++t++ a+ KIAA0067 806 VQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFAD 852 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy k + + + ++ Y+ +ld+ KIAA0067 853 KEG------LEMGDE-------YFANLDH--------------------- 868 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhk.lFp.dv. ie+v+++k+++++d++ KIAA0067 869 ----------------------------------IESVENFKeGYEsDAp 884 ....................e.eefsfed..........flWaasivsSR ++++++ + ++++++++++e++e+s +d+++++ +++ ++++s+++S+ KIAA0067 885 cssdssgvdlkdqedgnsgtEdPEESNDDssddnfckdeDFSTSSVWRSY 934 afsl.............................................. a +++++++++++ ++++++++++++ ++++ + +++ + ++ +++++++ KIAA0067 935 ATRRqtrgqkenglsettskdshppdlgpphipvppsipvggcnppssee 984 .................................................. +++++ + + ++ ++++ +++++++ +++++++++ ++++ + ++ + KIAA0067 985 tpknkvaswlscnsvseggfadsdshssfktneggegraggsrmeaekas 1034 .................................................. +++ + +++++ ++ ++++++++++ + ++++++ + ++++ ++++ ++ KIAA0067 1035 tsglgikdegdikqakkedtddrnkmsvvtessrnygynpspvkpeglrr 1084 .................................................. ++++++ +++++ + ++++++ + +++++++++++++++++ ++++ KIAA0067 1085 ppsktsmhqsrrlmasaqsnpddvltlssstesegesgtsrkptagqtsa 1134 .................................................. + ++++ ++ ++++++++ +++++ +++ +++ +++++ +++++ KIAA0067 1135 tavdsddiqtissgsegddfedkknmtgpmkrqvavkstrgfalksthgi 1184 ............ve..gv..n.resensegslelviDAtrkGNiaRFiNH ++++ + +++e+ +v++n+r+++++e+s +++iDA+ GN++R++NH KIAA0067 1185 aikstnmasvdkGEsaPVrkNtRQFYDGEES-CYIIDAKLEGNLGRYLNH 1233 SCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeELtyd SC+PN++vq+vfvd++d+ ++p++++fA + I+aG+ELt+d KIAA0067 1234 SCSPNLFVQNVFVDTHDL----------RFPWVAFFASKRIRAGTELTWD 1273 Ygydksnge<-* Y+y+ + +e KIAA0067 1274 YNYEVGSVE 1282 //