# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01355.fasta.huge -Q ../query/KIAA0064.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0064, 495 aa vs ./tmplib.23147 library 1987010 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.4880+/-0.0051; mu= 10.9610+/- 0.348 mean_var=90.6839+/-21.241, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.134682 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0488 ( 523 res) af14633 ( 523) 406 88.9 9.1e-19 >>KIAA0488 ( 523 res) af14633 (523 aa) initn: 269 init1: 174 opt: 406 Z-score: 428.8 bits: 88.9 E(): 9.1e-19 Smith-Waterman score: 436; 25.707% identity (58.098% similar) in 389 aa overlap (29-412:161-520) 10 20 30 40 50 KIAA00 AAEGERAEPLRPSQSGARPCRAVGNMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC :.:. . ...: .:.::... : : KIAA04 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPR--YKHVEQNGEKFVVYNVYMAGRQLC 140 150 160 170 180 60 70 80 90 100 110 KIAA00 RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG :: .. ::..:..:.. ..: .: : :::. ... ::. ::.:.. : . ..: KIAA04 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG 190 200 210 220 230 240 120 130 140 150 160 170 KIAA00 SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP :. .. :: ..... . : .: :.: : .: : : : .. :..: .:.:::. . KIAA04 ESDIMQEFLSESDENYNGV--SDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD 250 260 270 280 290 300 180 190 200 210 220 230 KIAA00 DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD . ..::.:: : . :::::: :.:. . . . : : : . .. KIAA04 STTVNYFALFEVI-----SHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE 310 320 330 340 350 360 240 250 260 270 280 290 KIAA00 DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG ... .: .... .. :.:.:...:.: . .:. ::..: :. . .: . .: . :. KIAA04 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN 370 380 390 400 410 420 300 310 320 330 340 350 KIAA00 YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP . : :. : .: :... . ....:. ::.. .:. .:. : KIAA04 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW------- 430 440 450 460 470 360 370 380 390 400 410 KIAA00 LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS .:. : . . ::: .. . .:: : .: .: :.. . :: .: KIAA04 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE 480 490 500 510 520 420 430 440 450 460 470 KIAA00 GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS KIAA04 EY 495 residues in 1 query sequences 1987010 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:30 2008 done: Thu Dec 18 15:06:30 2008 Total Scan time: 0.460 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]