hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16154612/chunk_1/iprscan-20080501-16154612.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0060
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00502 nagB: glucosamine-6-phosphate isomerase        541.3   3.3e-160   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00502   1/1      29   287 ..     1   260 []   541.3 3.3e-160

Alignments of top-scoring domains:
TIGR00502: domain 1 of 1, from 29 to 287: score 541.3, E = 3.3e-160
                   *->MrliilqTyEelskwAArhianrIneFKPtaarPFVLGLpTGgTPvg
                      M+liil++y + s wAA+ i nrI  F P  ++ F LGLpTG+TP+g
    KIAA0060    29    MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLG 75   

                   tYkqLIrlyqagkiSFqnVvTFNlDEYvGLseeHPeSYhsFMhnnFFqHI
                    Yk LI+ y++g +SF+ V TFN+DEYvGL+ +HPeSYhsFM+nnFF HI
    KIAA0060    76 CYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHI 125  

                   DikpenInIlNGNaddleAECrrYEekIkSyGgIdlflgGIGadGHIaFN
                   Di pen +Il GNa dl AEC   EekIk +GgI lf+gGIG+dGHIaFN
    KIAA0060   126 DIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFN 175  

                   EPGSSleSRTRikTLtedTiiANsRFFegDvnqVPKyALTvGIgTiLdFS
                   EPGSSl SRTR+kTL  dTi AN+RFF+g  ++VP  ALTvG+gT++d +
    KIAA0060   176 EPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMD-A 224  

                   kevllLvsGhqKAeAvqkavEGnvnhdwtiSaLQlHkhvivvcDeeAaqe
                    ev++L++G  KA A+ ka+E +vnh+wt+Sa Q H+  + vcDe A+ e
    KIAA0060   225 REVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLE 274  

                   LKvkTveYFnelE<-*
                   LKvkTv+YF  l    
    KIAA0060   275 LKVKTVKYFKGLM    287  

//