hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16140382/chunk_1/iprscan-20080501-16140382.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0059 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00412.12.fs LIM domain 204.2 2e-58 4 PF00412.12.ls LIM domain 203.9 3.4e-58 4 PF02209.10.fs Villin headpiece domain 74.8 4.6e-24 1 PF02209.10.ls Villin headpiece domain 76.8 6.1e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00412.12.fs 1/4 45 101 .. 1 61 [] 44.8 2.5e-12 PF00412.12.ls 1/4 45 101 .. 1 61 [] 46.7 7.2e-11 PF00412.12.ls 2/4 104 160 .. 1 61 [] 49.2 1.3e-11 PF00412.12.fs 2/4 104 141 .. 1 40 [. 51.8 2.3e-14 PF00412.12.ls 3/4 172 228 .. 1 61 [] 71.9 1.9e-18 PF00412.12.fs 3/4 172 228 .. 1 61 [] 70.0 1.3e-19 PF00412.12.fs 4/4 231 272 .. 1 44 [. 37.6 2.9e-10 PF00412.12.ls 4/4 231 287 .. 1 61 [] 36.1 1.1e-07 PF02209.10.fs 1/1 689 724 .] 1 36 [] 74.8 4.6e-24 PF02209.10.ls 1/1 689 724 .] 1 36 [] 76.8 6.1e-20 Alignments of top-scoring domains: PF00412.12.fs: domain 1 of 4, from 45 to 101: score 44.8, E = 2.5e-12 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C++Cg+p e++ r++ k++H++CF+C vCg+ L+ g+ ff+k+g KIAA0059 45 CHKCGEPCK-GEVL-RVQTKHFHIKCFTCKVCGCDLAQGG-FFIKNG 88 sklYCkhDyyklfg<-* + +C Dy++++g KIAA0059 89 -EYLCTLDYQRMYG 101 PF00412.12.ls: domain 1 of 4, from 45 to 101: score 46.7, E = 7.2e-11 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C++Cg+p e++ r++ k++H++CF+C vCg+ L+ g+ ff+k+g KIAA0059 45 CHKCGEPCK-GEVL-RVQTKHFHIKCFTCKVCGCDLAQGG-FFIKNG 88 sklYCkhDyyklfg<-* + +C Dy++++g KIAA0059 89 -EYLCTLDYQRMYG 101 PF00412.12.ls: domain 2 of 4, from 104 to 160: score 49.2, E = 1.3e-11 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C+gCg+ + +++++ Al+k +Hp+CF C+ C++p+ +gd++ + KIAA0059 104 CHGCGEFVEGEVVT--ALGKTYHPNCFACTICKRPFPPGDRVTFNGR 148 sklYCkhDyyklfg<-* +C+ + + ++ KIAA0059 149 -DCLCQL-CAQPMS 160 PF00412.12.fs: domain 2 of 4, from 104 to 141: score 51.8, E = 2.3e-14 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegd<-* C+gCg+ + +++++ Al+k +Hp+CF C+ C++p+ +gd KIAA0059 104 CHGCGEFVEGEVVT--ALGKTYHPNCFACTICKRPFPPGD 141 PF00412.12.ls: domain 3 of 4, from 172 to 228: score 71.9, E = 1.9e-18 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagCg+ I + + Aldk wH+ CF+C Cgk L+ + +kdg KIAA0059 172 CAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLTGE--YISKDG 215 sklYCkhDyyklfg<-* +YC++Dy+ lfg KIAA0059 216 -APYCEKDYQGLFG 228 PF00412.12.fs: domain 3 of 4, from 172 to 228: score 70.0, E = 1.3e-19 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg CagCg+ I + + Aldk wH+ CF+C Cgk L+ + +kdg KIAA0059 172 CAGCGRDIKNGQALL-ALDKQWHLGCFKCKSCGKVLTGE--YISKDG 215 sklYCkhDyyklfg<-* +YC++Dy+ lfg KIAA0059 216 -APYCEKDYQGLFG 228 PF00412.12.fs: domain 4 of 4, from 231 to 272: score 37.6, E = 2.9e-10 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffe<-* C +C++ I++++l A+dk++Hp+C rC+ C++ ++eg e ++ KIAA0059 231 CEACHQFITGKVLE--AGDKHYHPSCARCSRCNQMFTEGEEMYL 272 PF00412.12.ls: domain 4 of 4, from 231 to 287: score 36.1, E = 1.1e-07 *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffekdg C +C++ I++++l A+dk++Hp+C rC+ C++ ++eg e ++ KIAA0059 231 CEACHQFITGKVLE--AGDKHYHPSCARCSRCNQMFTEGEEMYLQGS 275 sklYCkhDyyklfg<-* + ++D+ + + KIAA0059 276 --TVWHPDCKQSTK 287 PF02209.10.fs: domain 1 of 1, from 689 to 724: score 74.8, E = 4.6e-24 *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-* +L +e F+e+FgM+++EF++LPlW++n++KKk++LF KIAA0059 689 HLAPEVFREIFGMSIQEFDRLPLWRRNDMKKKAKLF 724 PF02209.10.ls: domain 1 of 1, from 689 to 724: score 76.8, E = 6.1e-20 *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-* +L +e F+e+FgM+++EF++LPlW++n++KKk++LF KIAA0059 689 HLAPEVFREIFGMSIQEFDRLPLWRRNDMKKKAKLF 724 //