hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16103587/chunk_1/iprscan-20080501-16103587.nocrc
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Query sequence: KIAA0057
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03798.6.ls Longevity-assurance protein (LAG1)             270.2    3.7e-78   1
PF03798.6.fs Longevity-assurance protein (LAG1)             268.4    1.3e-77   1
PF08390.1.ls TRAM1-like protein                             111.1      3e-30   1
PF08390.1.fs TRAM1-like protein                             109.1    1.2e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08390.1.fs   1/1      59   125 ..     1    68 []   109.1  1.2e-29
PF08390.1.ls   1/1      59   125 ..     1    68 []   111.1    3e-30
PF03798.6.fs   1/1     146   341 ..     1   242 []   268.4  1.3e-77
PF03798.6.ls   1/1     146   341 ..     1   242 []   270.2  3.7e-78

Alignments of top-scoring domains:
PF08390.1.fs: domain 1 of 1, from 59 to 125: score 109.1, E = 1.2e-29
                   *->yaskFifLsYnvtiptaggstglYgkGikDlafVfFYmifftflRaf
                      +a  Fi+++Yn+++pta+++t  Y++G+kDl++++FY+++ ++l+a+
    KIAA0057    59    TAFLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAV 105  

                   lMeyVLrPiaryklgiskrkk<-*
                   ++ey+L++i++ +l++sk+k+   
    KIAA0057   106 VQEYILDKISK-RLHLSKVKH    125  

PF08390.1.ls: domain 1 of 1, from 59 to 125: score 111.1, E = 3e-30
                   *->yaskFifLsYnvtiptaggstglYgkGikDlafVfFYmifftflRaf
                      +a  Fi+++Yn+++pta+++t  Y++G+kDl++++FY+++ ++l+a+
    KIAA0057    59    TAFLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAV 105  

                   lMeyVLrPiaryklgiskrkk<-*
                   ++ey+L++i++ +l++sk+k+   
    KIAA0057   106 VQEYILDKISK-RLHLSKVKH    125  

PF03798.6.fs: domain 1 of 1, from 146 to 341: score 268.4, E = 1.3e-77
                   *->lYvlyCsRepylwfsdpkscVWegwgdqvYPhqpmsfqlklyYliQl
                      +Yv++ + e   ++++p+s+ We+     YPh++++fq+k++Yl+Ql
    KIAA0057   146    FYVVV-T-EG--YLTNPRSL-WED-----YPHVHLPFQVKFFYLCQL 182  

                   aFYlhQSllatLffdtrDIRkDFwemfvHHivTliLFHIvlSYvfNftRv
                   a++lh +l+ ++f+++r  ++++++++   ++ l+L HI+++Y++N++R+
    KIAA0057   183 AYWLH-ALPELYFQKVR--KEEIPRQLQ--YICLYLVHIAGAYLLNLSRL 227  

                   GlliLlLHDfSDvlLEiaKllkYagkegnsYyklyaLladalFvlFavsf
                   Gl++LlL++++++l+++a+l+++a++++           ++lF+ +a++f
    KIAA0057   228 GLILLLLQYSTEFLFHTARLFYFADENN-----------EKLFSAWAAVF 266  

                   vltRLiifPfwIlwstltesirligae.spepdpfyynfqtavirlplFn
                    +tRL+i+++++l ++ ++++r+++++ +pe+ +f++          lF+
    KIAA0057   267 GVTRLFILTLAVL-AIGFGLARMENQAfDPEKGNFNT----------LFC 305  

                   vvlLliLqlLhiyWfflIlRFmayrvltdrGeitkDvRSDSEsdde<-*
                     +L++L+l+++ + +l++R +++++l+   ++    R++++++++   
    KIAA0057   306 --RLCVLLLVCAAQAWLMWR-FIHSQLR---HW----REYWNEQSA    341  

PF03798.6.ls: domain 1 of 1, from 146 to 341: score 270.2, E = 3.7e-78
                   *->lYvlyCsRepylwfsdpkscVWegwgdqvYPhqpmsfqlklyYliQl
                      +Yv++ + e   ++++p+s+ We+     YPh++++fq+k++Yl+Ql
    KIAA0057   146    FYVVV-T-EG--YLTNPRSL-WED-----YPHVHLPFQVKFFYLCQL 182  

                   aFYlhQSllatLffdtrDIRkDFwemfvHHivTliLFHIvlSYvfNftRv
                   a++lh +l+ ++f+++r  ++++++++   ++ l+L HI+++Y++N++R+
    KIAA0057   183 AYWLH-ALPELYFQKVR--KEEIPRQLQ--YICLYLVHIAGAYLLNLSRL 227  

                   GlliLlLHDfSDvlLEiaKllkYagkegnsYyklyaLladalFvlFavsf
                   Gl++LlL++++++l+++a+l+++a++++           ++lF+ +a++f
    KIAA0057   228 GLILLLLQYSTEFLFHTARLFYFADENN-----------EKLFSAWAAVF 266  

                   vltRLiifPfwIlwstltesirligae.spepdpfyynfqtavirlplFn
                    +tRL+i+++++l ++ ++++r+++++ +pe+ +f++          lF+
    KIAA0057   267 GVTRLFILTLAVL-AIGFGLARMENQAfDPEKGNFNT----------LFC 305  

                   vvlLliLqlLhiyWfflIlRFmayrvltdrGeitkDvRSDSEsdde<-*
                     +L++L+l+++ + +l++R +++++l+   ++    R++++++++   
    KIAA0057   306 --RLCVLLLVCAAQAWLMWR-FIHSQLR---HW----REYWNEQSA    341  

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