# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha00909.fasta.nr -Q ../query/KIAA0057.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0057, 384 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826771 sequences Expectation_n fit: rho(ln(x))= 4.3409+/-0.000182; mu= 13.8431+/- 0.010 mean_var=63.0825+/-12.589, 0's: 35 Z-trim: 36 B-trim: 3102 in 1/66 Lambda= 0.161480 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18202502|sp|Q15035.1|TRAM2_HUMAN RecName: Full= ( 370) 2499 590.9 1.4e-166 gi|114607845|ref|XP_518539.2| PREDICTED: transloca ( 370) 2498 590.7 1.7e-166 gi|109071503|ref|XP_001107590.1| PREDICTED: transl ( 373) 2483 587.2 1.9e-165 gi|194223600|ref|XP_001499056.2| PREDICTED: simila ( 370) 2461 582.1 6.7e-164 gi|194038177|ref|XP_001928862.1| PREDICTED: simila ( 370) 2398 567.4 1.7e-159 gi|119915452|ref|XP_874614.2| PREDICTED: similar t ( 370) 2395 566.7 2.8e-159 gi|73973326|ref|XP_532171.2| PREDICTED: similar to ( 606) 2345 555.3 1.3e-155 gi|50401641|sp|Q924Z5.1|TRAM2_MOUSE RecName: Full= ( 370) 2271 537.8 1.4e-150 gi|109486867|ref|XP_001070862.1| PREDICTED: simila ( 370) 2231 528.5 9e-148 gi|149069201|gb|EDM18642.1| rCG43421 [Rattus norve ( 363) 2163 512.6 5.2e-143 gi|195539921|gb|AAI67893.1| Unknown (protein for M ( 372) 1908 453.2 4.1e-125 gi|57033136|gb|AAH88952.1| LOC398231 protein [Xeno ( 371) 1905 452.5 6.6e-125 gi|13936289|gb|AAK40303.1| Tram2 [Xenopus laevis] ( 371) 1899 451.1 1.7e-124 gi|47224659|emb|CAG03643.1| unnamed protein produc ( 369) 1722 409.9 4.5e-112 gi|209154314|gb|ACI33389.1| Translocation-associat ( 369) 1667 397.1 3.2e-108 gi|28422315|gb|AAH46900.1| Translocation associate ( 371) 1644 391.7 1.3e-106 gi|62202582|gb|AAH93129.1| Translocation associate ( 371) 1644 391.7 1.3e-106 gi|42542452|gb|AAH66535.1| Translocation associate ( 371) 1624 387.1 3.3e-105 gi|61403590|gb|AAH91895.1| Zgc:113278 [Danio rerio ( 374) 1408 336.8 4.7e-90 gi|47229317|emb|CAG04069.1| unnamed protein produc ( 393) 1396 334.0 3.4e-89 gi|13936287|gb|AAK40302.1| Tram1 [Xenopus laevis] ( 373) 1378 329.8 6e-88 gi|82182635|sp|Q6DED0.1|TR1L1_XENLA RecName: Full= ( 373) 1373 328.6 1.3e-87 gi|45709799|gb|AAH67965.1| Translocation associate ( 373) 1373 328.6 1.3e-87 gi|26449182|dbj|BAC41721.1| Translocating chain-as ( 374) 1368 327.4 3e-87 gi|50401639|sp|Q91V04.3|TRAM1_MOUSE RecName: Full= ( 374) 1358 325.1 1.5e-86 gi|74185528|dbj|BAE30232.1| unnamed protein produc ( 374) 1358 325.1 1.5e-86 gi|74208288|dbj|BAE26348.1| unnamed protein produc ( 374) 1358 325.1 1.5e-86 gi|74216452|dbj|BAE25150.1| unnamed protein produc ( 374) 1357 324.9 1.8e-86 gi|81883693|sp|Q5XI41.3|TRAM1_RAT RecName: Full=Tr ( 374) 1348 322.8 7.6e-86 gi|109940039|sp|Q9GKZ4.3|TRAM1_BOVIN RecName: Full ( 374) 1345 322.1 1.2e-85 gi|401208|sp|Q01685.2|TRAM1_CANFA RecName: Full=Tr ( 374) 1344 321.9 1.5e-85 gi|149721332|ref|XP_001493189.1| PREDICTED: simila ( 374) 1344 321.9 1.5e-85 gi|18202507|sp|Q15629.3|TRAM1_HUMAN RecName: Full= ( 374) 1342 321.4 2e-85 gi|47223550|emb|CAF98037.1| unnamed protein produc ( 370) 1338 320.5 3.8e-85 gi|49456269|emb|CAG46455.1| TRAM1 [Homo sapiens] ( 374) 1337 320.2 4.5e-85 gi|55630806|ref|XP_519803.1| PREDICTED: translocat ( 374) 1337 320.2 4.5e-85 gi|58399495|gb|AAH89249.1| LOC398230 protein [Xeno ( 350) 1334 319.5 7e-85 gi|109086655|ref|XP_001082538.1| PREDICTED: transl ( 374) 1333 319.3 8.6e-85 gi|126321059|ref|XP_001368009.1| PREDICTED: simila ( 374) 1329 318.4 1.6e-84 gi|75041486|sp|Q5R7Z3.3|TRAM1_PONAB RecName: Full= ( 374) 1329 318.4 1.6e-84 gi|38649363|gb|AAH63238.1| Translocating chain-ass ( 369) 1328 318.1 1.9e-84 gi|158259817|dbj|BAF82086.1| unnamed protein produ ( 374) 1326 317.7 2.7e-84 gi|13936277|gb|AAK40297.1| Tram1 [Danio rerio] ( 369) 1319 316.0 8.2e-84 gi|9971728|gb|AAG10391.1| translocation chain-memb ( 358) 1306 313.0 6.5e-83 gi|157170688|emb|CAM88657.1| translocation-associa ( 361) 1290 309.3 8.7e-82 gi|194382588|dbj|BAG64464.1| unnamed protein produ ( 343) 1234 296.2 7.1e-78 gi|210131920|gb|EEA79587.1| hypothetical protein B ( 391) 1153 277.4 3.7e-72 gi|37361824|gb|AAQ91025.1| LRRGT00069 [Rattus norv ( 500) 1124 270.7 4.8e-70 gi|149698271|ref|XP_001503337.1| PREDICTED: simila ( 370) 1091 262.9 8e-68 gi|90078212|dbj|BAE88786.1| unnamed protein produc ( 369) 1087 262.0 1.5e-67 >>gi|18202502|sp|Q15035.1|TRAM2_HUMAN RecName: Full=Tran (370 aa) initn: 2499 init1: 2499 opt: 2499 Z-score: 3146.6 bits: 590.9 E(): 1.4e-166 Smith-Waterman score: 2499; 100.000% identity (100.000% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|182 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :::::::::::::::::::::::: gi|182 GYHENGVVKAENGTSPRTKKLKSP 350 360 370 >>gi|114607845|ref|XP_518539.2| PREDICTED: translocation (370 aa) initn: 2498 init1: 2498 opt: 2498 Z-score: 3145.4 bits: 590.7 E(): 1.7e-166 Smith-Waterman score: 2498; 99.730% identity (100.000% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|114 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|114 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYVLDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :::::::::::::::::::::::: gi|114 GYHENGVVKAENGTSPRTKKLKSP 350 360 370 >>gi|109071503|ref|XP_001107590.1| PREDICTED: translocat (373 aa) initn: 2095 init1: 2095 opt: 2483 Z-score: 3126.4 bits: 587.2 E(): 1.9e-165 Smith-Waterman score: 2483; 99.196% identity (99.196% similar) in 373 aa overlap (15-384:1-373) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|109 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 KIAA00 FLFILPQYNISVPTA---DSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKR ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|109 FLFILPQYNISVPTAEQQDSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKR 50 60 70 80 90 100 120 130 140 150 160 170 KIAA00 LHLSKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LHLSKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFF 110 120 130 140 150 160 180 190 200 210 220 230 KIAA00 YLCQLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YLCQLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYS 170 180 190 200 210 220 240 250 260 270 280 290 KIAA00 TEFLFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TEFLFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEK 230 240 250 260 270 280 300 310 320 330 340 350 KIAA00 GNFNTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GNFNTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIK 290 300 310 320 330 340 360 370 380 KIAA00 RESGYHENGVVKAENGTSPRTKKLKSP ::::::::::::::::::::::::::: gi|109 RESGYHENGVVKAENGTSPRTKKLKSP 350 360 370 >>gi|194223600|ref|XP_001499056.2| PREDICTED: similar to (370 aa) initn: 2461 init1: 2461 opt: 2461 Z-score: 3098.8 bits: 582.1 E(): 6.7e-164 Smith-Waterman score: 2461; 97.838% identity (100.000% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|194 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 FLFILPQYNVSVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::::::..::::::::::::::::::::::::::::.::::::::::: gi|194 SKVKHSKFNESGQLVVFHLSSVIWCFYVVVTEGYLTNPRSLWEDYPHVYLPFQVKFFYLC 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF :::::::::::::::::::.::::::::::::::::::::::::::::::::::::.::: gi|194 LFHTARLFYFADENNEKLFNAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPERGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES :::.:::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|194 NTLLCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPAVPRLPARLIKRES 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :::::::::::::::::::::::: gi|194 GYHENGVVKAENGTSPRTKKLKSP 350 360 370 >>gi|194038177|ref|XP_001928862.1| PREDICTED: similar to (370 aa) initn: 2398 init1: 2398 opt: 2398 Z-score: 3019.5 bits: 567.4 E(): 1.7e-159 Smith-Waterman score: 2398; 95.405% identity (98.919% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|194 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::.::::::.::::::::::::::: ::::::::::::::::::::::::::: gi|194 FLFILPQYNVSVPTADGETVHYHYGPKDLVTISFYIFITIILHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::::::..::::::::::::::::::::::::::::.::::::::::: gi|194 SKVKHSKFNESGQLVVFHLSSVIWCFYVVVTEGYLTNPRSLWEDYPHVYLPFQVKFFYLC 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF ::::::::::::: :::::::::::::::::::::::::::::::::::.:::::::::: gi|194 QLAYWLHALPELYXQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLVLLLLQYSTEF 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF ::::::: .::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|194 LFHTARLCHFADENNEKLFNAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES :::.::::::::::::::::::::::::::::::::.::.::::::..::: :::::::: gi|194 NTLLCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWSEQNAKRRVPTAPRLAARLIKRES 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :::::::::::::::::::::::: gi|194 GYHENGVVKAENGTSPRTKKLKSP 350 360 370 >>gi|119915452|ref|XP_874614.2| PREDICTED: similar to Tr (370 aa) initn: 2395 init1: 2395 opt: 2395 Z-score: 3015.7 bits: 566.7 E(): 2.8e-159 Smith-Waterman score: 2395; 95.135% identity (99.189% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::::::::::::::::::::::::::::::: gi|119 MAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::.:.::::.:::.::::::::::.::::::.::::::::::::::::::::: gi|119 FLFILPQYNVSMPTADGETVQYHYGPKDLVTVLFYIFIAIILHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::::::..::::::::::::::::::::::::::::.::::::::::: gi|119 SKVKHSKFNESGQLVVFHLSSVIWCFYVVVTEGYLTNPRSLWEDYPHVYLPFQVKFFYLC 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|119 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLVLLLLQYSTEF 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF ::::::: .::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|119 LFHTARLCHFADENNEKLFNAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES :::.::::::::::::::::::::::::::::::::.::::::::::.::: :::::::: gi|119 NTLLCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWSEQSAKRRVPAAPRLAARLIKRES 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP ::::::::::::::: :::::::: gi|119 GYHENGVVKAENGTSTRTKKLKSP 350 360 370 >>gi|73973326|ref|XP_532171.2| PREDICTED: similar to Tra (606 aa) initn: 2345 init1: 2345 opt: 2345 Z-score: 2950.0 bits: 555.3 E(): 1.3e-155 Smith-Waterman score: 2345; 96.067% identity (99.719% similar) in 356 aa overlap (29-384:251-606) 10 20 30 40 50 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAK ..::::::::::::.::::::::::::::: gi|739 AELHPPPTHHPPTLPWIQSKYCNCRSSWSGKQFVIHNHADIGFCVVLCVLIGLMFEVTAK 230 240 250 260 270 280 60 70 80 90 100 110 KIAA00 TAFLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRL ::::::::::::::::::.::::::::::::::::::.:::::::::::::::::::::: gi|739 TAFLFILPQYNISVPTADGETVHYHYGPKDLVTILFYVFITIILHAVVQEYILDKISKRL 290 300 310 320 330 340 120 130 140 150 160 170 KIAA00 HLSKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFY :::::::::::::::::.::..::::::::::::::::::::::::::::.::::::::: gi|739 HLSKVKHSKFNESGQLVIFHLSSVIWCFYVVVTEGYLTNPRSLWEDYPHVYLPFQVKFFY 350 360 370 380 390 400 180 190 200 210 220 230 KIAA00 LCQLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LCQLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYST 410 420 430 440 450 460 240 250 260 270 280 290 KIAA00 EFLFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKG ::::: :::::::::::::::.:::::::.:::::::::::::::::::::::::::::: gi|739 EFLFHMARLFYFADENNEKLFNAWAAVFGITRLFILTLAVLAIGFGLARMENQAFDPEKG 470 480 490 500 510 520 300 310 320 330 340 350 KIAA00 NFNTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKR :::::.:::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|739 NFNTLLCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPAAPRLPARLIKR 530 540 550 560 570 580 360 370 380 KIAA00 ESGYHENGVVKAENGTSPRTKKLKSP :::::::::::::::::::::::::: gi|739 ESGYHENGVVKAENGTSPRTKKLKSP 590 600 >>gi|50401641|sp|Q924Z5.1|TRAM2_MOUSE RecName: Full=Tran (370 aa) initn: 2271 init1: 2271 opt: 2271 Z-score: 2859.6 bits: 537.8 E(): 1.4e-150 Smith-Waterman score: 2271; 90.000% identity (96.757% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA :::::::::::::::::.:::::::::::::::::::::::::::: gi|504 MAFRRRTKSYPLFSQEFIIHNHADIGFCLVLCVLIGLMFEVTAKTA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :::::::::::::::::::::::::::::::::::. ::::.:::::::::::::::::: gi|504 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYVVITIIFHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::.:::...: :::::.:::::::::::::::::::.: :::::::: gi|504 SKVKHSKFNESGQLLVFHLSAVAWCFYVIVTEGYLTNPRSLWEDYPHVYLSFQVKFFYLG 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::.:::::::::::::.:::::::::::.::.:::::::::::::::::::::: gi|504 QLAYWLHSLPELYFQKVRKEEVPRQLQYICLYLLHITGAYLLNLSRLGLILLLLQYSTEA 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF ::: ::::.:::::::.::.:::::::::::::::::::.:::::::.:::.:::::::: gi|504 LFHMARLFHFADENNERLFNAWAAVFGVTRLFILTLAVLTIGFGLARVENQVFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES ::: ::: .:::::.:::::::::::::::::::::.:::::::: :.:: ::.:.::: gi|504 NTLPCRLGMLLLVCVAQAWLMWRFIHSQLRHWREYWKEQSAKRRVSAVPRPPAKLLKREP 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP ::::::::::::::: :::::::: gi|504 GYHENGVVKAENGTSSRTKKLKSP 350 360 370 >>gi|109486867|ref|XP_001070862.1| PREDICTED: similar to (370 aa) initn: 2231 init1: 2231 opt: 2231 Z-score: 2809.2 bits: 528.5 E(): 9e-148 Smith-Waterman score: 2231; 89.730% identity (96.216% similar) in 370 aa overlap (15-384:1-370) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA ::::::::::::::::::::::::: : :::::::::::::::: : gi|109 MAFRRRTKSYPLFSQEFVIHNHADIVFFLVLCVLIGLMFEVTAKIA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :: ::::::.::::::::::.::::::::.::::::.::::::::::::::::::::::: gi|109 FLCILPQYNVSVPTADSETVNYHYGPKDLATILFYILITIILHAVVQEYILDKISKRLHL 50 60 70 80 90 100 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::::::..:: ::.:::.:::::.::::::::::::.: :::::::: gi|109 SKVKHSKFNESGQLVVFHLSSVAWCLYVVATEGYLSNPRSLWEDYPHVYLSFQVKFFYLG 110 120 130 140 150 160 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|109 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLLHIAGAYLLNLSRLGLILLLLQYSTEA 170 180 190 200 210 220 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF ::: ::::::::::::.::.:::::::::::::.:::::.:::::::.:::.:::::::: gi|109 LFHMARLFYFADENNERLFNAWAAVFGVTRLFIFTLAVLTIGFGLARVENQVFDPEKGNF 230 240 250 260 270 280 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES ::: ::: .:::::.:::::::::::::::::::::.:::::::: :.:::::::.::: gi|109 NTLPCRLGMLLLVCVAQAWLMWRFIHSQLRHWREYWKEQSAKRRVSAVPRLPARLLKREP 290 300 310 320 330 340 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :.:::::::.::::: :::::::: gi|109 GFHENGVVKTENGTSSRTKKLKSP 350 360 370 >>gi|149069201|gb|EDM18642.1| rCG43421 [Rattus norvegicu (363 aa) initn: 2173 init1: 1652 opt: 2163 Z-score: 2723.7 bits: 512.6 E(): 5.2e-143 Smith-Waterman score: 2163; 87.838% identity (94.324% similar) in 370 aa overlap (15-384:1-363) 10 20 30 40 50 60 KIAA00 AQGAGPAGRCAPAAMAFRRRTKSYPLFSQEFVIHNHADIGFCLVLCVLIGLMFEVTAKTA ::::::::::::::::::::::::: : :::::::::::::::: : gi|149 MAFRRRTKSYPLFSQEFVIHNHADIVFFLVLCVLIGLMFEVTAKIA 10 20 30 40 70 80 90 100 110 120 KIAA00 FLFILPQYNISVPTADSETVHYHYGPKDLVTILFYIFITIILHAVVQEYILDKISKRLHL :: ::::::.::::::::::.::::::::.::::::.:::::::: :::::::: gi|149 FLCILPQYNVSVPTADSETVNYHYGPKDLATILFYILITIILHAV-------KISKRLHL 50 60 70 80 90 130 140 150 160 170 180 KIAA00 SKVKHSKFNESGQLVVFHFTSVIWCFYVVVTEGYLTNPRSLWEDYPHVHLPFQVKFFYLC ::::::::::::::::::..:: ::.:::.:::::.::::::::::::.: :::::::: gi|149 SKVKHSKFNESGQLVVFHLSSVAWCLYVVATEGYLSNPRSLWEDYPHVYLSFQVKFFYLG 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLVHIAGAYLLNLSRLGLILLLLQYSTEF :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|149 QLAYWLHALPELYFQKVRKEEIPRQLQYICLYLLHIAGAYLLNLSRLGLILLLLQYSTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 LFHTARLFYFADENNEKLFSAWAAVFGVTRLFILTLAVLAIGFGLARMENQAFDPEKGNF ::: ::::::::::::.::.:::::::::::::.:::::.:::::::.:::.:::::::: gi|149 LFHMARLFYFADENNERLFNAWAAVFGVTRLFIFTLAVLTIGFGLARVENQVFDPEKGNF 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 NTLFCRLCVLLLVCAAQAWLMWRFIHSQLRHWREYWNEQSAKRRVPATPRLPARLIKRES ::: ::: .:::::.:::::::::::::::::::::.:::::::: :.:::::::.::: gi|149 NTLPCRLGMLLLVCVAQAWLMWRFIHSQLRHWREYWKEQSAKRRVSAVPRLPARLLKREP 280 290 300 310 320 330 370 380 KIAA00 GYHENGVVKAENGTSPRTKKLKSP :.:::::::.::::: :::::::: gi|149 GFHENGVVKTENGTSSRTKKLKSP 340 350 360 384 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 17:37:52 2009 done: Tue Mar 3 17:42:31 2009 Total Scan time: 1446.460 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]