hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09265937/chunk_1/iprscan-20080909-09265937.nocrc
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Query sequence: KIAA0054
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00642.15.fs Zinc finger C-x8-C-x5-C-x3-H type (and simil    33.5    2.1e-10   1
PF00642.15.ls Zinc finger C-x8-C-x5-C-x3-H type (and simil    35.6    1.6e-07   1
PF07145.5.fs Ataxin-2 C-terminal region                      24.6    3.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00642.15.fs   1/1     180   206 ..     1    27 []    33.5  2.1e-10
PF00642.15.ls   1/1     180   206 ..     1    27 []    35.6  1.6e-07
PF07145.5.fs   1/1    1096  1113 ..     1    18 []    24.6  3.1e-06

Alignments of top-scoring domains:
PF00642.15.fs: domain 1 of 1, from 180 to 206: score 33.5, E = 2.1e-10
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                        + lC++f++ G C+yG++C  aH++   
    KIAA0054   180    EEYTLCKRFLEQGICRYGAQCTSAHSQ    206  

PF00642.15.ls: domain 1 of 1, from 180 to 206: score 35.6, E = 1.6e-07
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                        + lC++f++ G C+yG++C  aH++   
    KIAA0054   180    EEYTLCKRFLEQGICRYGAQCTSAHSQ    206  

PF07145.5.fs: domain 1 of 1, from 1096 to 1113: score 24.6, E = 3.1e-06
                   *->kkkskLNPnAkEFVPssk<-*
                      kk+++LNP+A+EF+P+ +   
    KIAA0054  1096    KKTYVLNPLAPEFIPRAL    1113 

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