hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16034633/chunk_1/iprscan-20080501-16034633.nocrc
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Query sequence: KIAA0053
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 227.1    1.5e-63   1
SM00233                                                  95.7    5.3e-24   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      68   174 ..     1    82 []    95.7  5.3e-24
SM00324     1/1     195   371 ..     1   193 []   227.1  1.5e-63

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 68 to 174: score 95.7, E = 5.3e-24
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      +ik GwL+k+ +  ++w++ryfvL+ ++L+yyk+++++kp+g++ L 
    KIAA0053    68    PIKMGWLKKQRsiVkNWQQRYFVLRAQQLYYYKDEedtKPQGCMYLP 114  

                   gcsvre.p.........cFeivt.dr........tlllqAeseeereeWv
                   gc+++e + ++++ ++ +Fei+  ++++++ ++++++l A+s+ e+eeWv
    KIAA0053   115 GCTIKEiAtnpeeagkfVFEIIPaSWdqnrmgqdSYVLMASSQAEMEEWV 164  

                   ealqsaiaka<-*
                   + l++++      
    KIAA0053   165 KFLRRVAGTP    174  

SM00324: domain 1 of 1, from 195 to 371: score 227.1, E = 1.5e-63
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + +Pi+vekC e++ ++G ++eGI+R++G+   vk+Lr+afd ge +
    KIAA0053   195    HLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDAGERp 241  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   +             ++++ dvh+vA+lLKlyLR+LPeP++++++ye f+ 
    KIAA0053   242 S-------------FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLL 278  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   + +l            ++ de +++++l++ ls+LP+ n+++L y++++L
    KIAA0053   279 CGQL------------TNADEAKAQQELMKQLSILPRDNYSLLSYICrFL 316  

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   ++++ + +vNkM+++NLA+v+g +L+r++ +++   +  + ++++v+ ++
    KIAA0053   317 HEIQLNCAVNKMSVDNLATVIGVNLIRSKvedpaviMRGTPQIQRVMTMM 366  

                   ienad<-*
                   i++++   
    KIAA0053   367 IRDHE    371  

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