hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16034633/chunk_1/iprscan-20080501-16034633.nocrc
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Query sequence: KIAA0053
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  198.3    3.2e-58   1
PF00620.17.ls RhoGAP domain                                  200.2    4.4e-57   1
PF00169.19.fs PH domain                                       97.9    2.5e-29   1
PF00169.19.ls PH domain                                       99.9    7.1e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      68   172 ..     1    92 []    97.9  2.5e-29
PF00169.19.ls   1/1      68   172 ..     1    92 []    99.9  7.1e-27
PF00620.17.fs   1/1     198   351 ..     1   155 []   198.3  3.2e-58
PF00620.17.ls   1/1     198   351 ..     1   155 []   200.2  4.4e-57

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 68 to 172: score 97.9, E = 2.5e-29
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      +ik+GwL+k+ +  k+w++RyfvL+  +L+yykd+ + kp+g++ L 
    KIAA0053    68    PIKMGWLKKQRsIVKNWQQRYFVLRAQQLYYYKDEEdTKPQGCMYLP 114  

                   giqvtkvpdn...krkncFeirt.dr.......etlllqaeseeerkeWv
                   g++++++  n+++  k++Fei+  ++++++ ++++++l+a+s+ e++eWv
    KIAA0053   115 GCTIKEIATNpeeAGKFVFEIIPaSWdqnrmgqDSYVLMASSQAEMEEWV 164  

                   kaiqsair<-*
                   k +++++    
    KIAA0053   165 KFLRRVAG    172  

PF00169.19.ls: domain 1 of 1, from 68 to 172: score 99.9, E = 7.1e-27
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs
                      +ik+GwL+k+ +  k+w++RyfvL+  +L+yykd+ + kp+g++ L 
    KIAA0053    68    PIKMGWLKKQRsIVKNWQQRYFVLRAQQLYYYKDEEdTKPQGCMYLP 114  

                   giqvtkvpdn...krkncFeirt.dr.......etlllqaeseeerkeWv
                   g++++++  n+++  k++Fei+  ++++++ ++++++l+a+s+ e++eWv
    KIAA0053   115 GCTIKEIATNpeeAGKFVFEIIPaSWdqnrmgqDSYVLMASSQAEMEEWV 164  

                   kaiqsair<-*
                   k +++++    
    KIAA0053   165 KFLRRVAG    172  

PF00620.17.fs: domain 1 of 1, from 198 to 351: score 198.3, E = 3.2e-58
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++vekC ef+ ++G ++EGI+R++G    +k+Lr+afd ge++   
    KIAA0053   198    PILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDAGERPS-- 242  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefiea.aaksedeeerle
                   ++++ dvh+vAslLKl+LR+LPeP+++ ++ye f++++ + + de    +
    KIAA0053   243 FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCgQLTNADEAKAQQ 292  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   +l + l+ LP+ N+++L y++++L++++ n++vNkM++ NLA+v+g +L+
    KIAA0053   293 ELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLI 342  

                   rppdgdsad<-*
                   r++++d+a    
    KIAA0053   343 RSKVEDPAV    351  

PF00620.17.ls: domain 1 of 1, from 198 to 351: score 200.2, E = 4.4e-57
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++vekC ef+ ++G ++EGI+R++G    +k+Lr+afd ge++   
    KIAA0053   198    PILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDAGERPS-- 242  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefiea.aaksedeeerle
                   ++++ dvh+vAslLKl+LR+LPeP+++ ++ye f++++ + + de    +
    KIAA0053   243 FDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCgQLTNADEAKAQQ 292  

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                   +l + l+ LP+ N+++L y++++L++++ n++vNkM++ NLA+v+g +L+
    KIAA0053   293 ELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLI 342  

                   rppdgdsad<-*
                   r++++d+a    
    KIAA0053   343 RSKVEDPAV    351  

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