hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16002052/chunk_1/iprscan-20080501-16002052.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0051 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00323 312.3 3.4e-89 1 SM00015 87.8 1.3e-21 4 SM00033 83.4 2.8e-20 1 SM00456 29.9 0.00034 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00033 1/1 67 176 .. 1 100 [] 83.4 2.8e-20 SM00456 1/1 701 733 .. 1 34 [] 29.9 0.00034 SM00015 1/4 765 787 .. 1 23 [] 23.8 0.024 SM00015 2/4 795 817 .. 1 23 [] 31.1 0.00016 SM00015 3/4 825 847 .. 1 23 [] 20.9 0.18 SM00015 4/4 855 877 .. 1 23 [] 12.1 16 SM00323 1/1 1013 1366 .. 1 390 [] 312.3 3.4e-89 Alignments of top-scoring domains: SM00033: domain 1 of 1, from 67 to 176: score 83.4, E = 2.8e-20 *->eeeallrWinsll.....kvtnfssdlkDGvvLckLlnslsPagsvd e+++rW++++l+++ +++t+++++l++Gv L+kL n +sP + v+ KIAA0051 67 HLEEAKRWMEACLgedlpPTTELEEGLRNGVYLAKLGNFFSP-KVVS 112 kkk..............rfkkleNinlalsfaeklgafLGvgkvvlfdpe kk ++++++ + ++ +f++++N+ ++l++++++ G++k ++ ++ KIAA0051 113 LKKiydreqtrykatglHFRHTDNVIQWLNAMDEI----GLPKIFYPETT 158 DlvegnenkklilgviwtLirl<-* D+++ +k+++ +i+++++l KIAA0051 159 DIYD----RKNMPRCIYCIHAL 176 SM00456: domain 1 of 1, from 701 to 733: score 29.9, E = 0.00034 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* + ++ W++++ + G++YY+N eT+e W+ P + KIAA0051 701 DNNSKWVKHWVKG-GYYYYHNLETQEGGWDEPPN 733 SM00015: domain 1 of 4, from 765 to 787: score 23.8, E = 0.024 *->rleraAiiIQaawRGylaRkryk<-* e ++++Qa++RGyl+R++++ KIAA0051 765 ANEGLITRLQARCRGYLVRQEFR 787 SM00015: domain 2 of 4, from 795 to 817: score 31.1, E = 0.00016 *->rleraAiiIQaawRGylaRkryk<-* ++ a+++IQ+ wRGy++ k y+ KIAA0051 795 KQIPAITCIQSQWRGYKQKKAYQ 817 SM00015: domain 3 of 4, from 825 to 847: score 20.9, E = 0.18 *->rleraAiiIQaawRGylaRkryk<-* + +++IQ+ +R+++aRkry+ KIAA0051 825 SHKDEVVKIQSLARMHQARKRYR 847 SM00015: domain 4 of 4, from 855 to 877: score 12.1, E = 16 *->rleraAiiIQaawRGylaRkryk<-* +i+IQa++R +aR yk KIAA0051 855 DHINDIIKIQAFIRANKARDDYK 877 SM00323: domain 1 of 1, from 1013 to 1366: score 312.3, E = 3.4e-89 *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla ++++++ +++++ v++t+++++s+++ee+l+L l++++ l +++ KIAA0051 1013 QMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFKTA---LQEEIK 1056 saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt s +++++ ++ +++++k+v F+r rg++ Lr+++++ v++ KIAA0051 1057 SKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKE-----IM 1101 lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl +++++++ t +++ y +v++++ +t++ + L++ v+ ++ ++ +++K KIAA0051 1102 DDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQ-ALAHEEVKT 1150 evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic l+ +++n +++++++++aI++S+d +Pyg+R+i KIAA0051 1151 ---------------RLDSSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIA 1185 kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvde... k L+ +++++Fp+a +d+ +k++++++++R+++PAI+ P++F+++d + + KIAA0051 1186 KVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDAFDIIDLsag 1235 .hpdpttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkq +++ ++rR+L +iAK lQ+ A+++ f + + ++ n++l q KIAA0051 1236 gQLTTDQRRNLGSIAKMLQHAASNKM-----FLGDNAHLSII--NEYLSQ 1278 hkdrvkdFLdelssvdepsesL.vdkveelptkskPVstisgrelsllHs ++++++F++ ++v+e ++++vd +++l+t++kPV++is++e++++H+ KIAA0051 1279 SYQKFRRFFQTACDVPELQDKFnVDEYSDLVTLTKPVIYISIGEIINTHT 1328 lllengdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<- lll+++da+ ++ n dp+ +ll +l ++++++ + ++ KIAA0051 1329 LLLDHQDAIAPEHN----------DPIHELLDDLGEVPTIESLIGESS 1366 * KIAA0051 - - //